CellProfiler was published in 2006 and has been cited in 493 articles (last updated March 28, 2012):
Adams BR, Golding SE, Rao RR, Valerie K (2010) Dynamic Dependence on ATR and ATM for Double-Strand Break Repair in Human Embryonic Stem Cells and Neural Descendants. PLoS ONE 5(4):e10001. PMID: 20368801. Available at http://www.ncbi.nlm.nih.gov/pubmed/20368801
Aghajanian J, Warrell J, Prince SJD, Peng L, Rohn JL, Baum B (2009) Patch-based within-object classification. Computer Vision, 2009 IEEE 12th International Conference on:1125-32. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5459352
Akimov V, Rigbolt KTG, Nielsen MM, Blagoev B (2011) Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics. Molecular BioSystems 7(12):3223-3233. PMID: 21956701. Available at http://www.ncbi.nlm.nih.gov/pubmed/21956701
Albrecht D, Kniemeyer O, Mech F, Gunzer M, Brakhage A, Guthke R (2011) On the way toward systems biology of Aspergillus fumigatus infection. International Journal of Medical Microbiology 301(5):453-9. PMID: 21555243. Available at http://www.ncbi.nlm.nih.gov/pubmed/21555243
Ali R, Gooding M, Szilagyi T, Vojnovic B, Christlieb M, Brady M (2011) Automatic segmentation of adherent biological cell boundaries and nuclei from brightfield microscopy images. Machine Vision and Applications:1-15. PMID: none. Available at http://dx.doi.org/10.1007/s00138-011-0337-9
Alimperti S, Lei P, Tian J, Andreadis ST (2012) A novel lentivirus for quantitative assessment of gene knockdown in stem cell differentiation. Gene Therapy, epub ahead of print. PMID: 22241174. Available at http://www.ncbi.nlm.nih.gov/pubmed/22241174
Allalou A, van de Rijke FM, Tafrechi RJ, Raap AK, Wählby C (2007) Image Based Measurements of Single Cell mtDNA Mutation Load. Scandinavian Conference on Image Analysis. PMID: none. Available at http://www.springerlink.com/content/b12548446765l017/
Allalou A, Wählby C (2009) BlobFinder, a tool for fluorescence microscopy image cytometry. Computer methods and programs in biomedicine 94(1):58-65. PMID: 18950895. Available at http://www.ncbi.nlm.nih.gov/pubmed/18950895
Allan C, Burel J-M, Moore J, Blackburn C, Linkert M, Loynton S, MacDonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR (2012) OMERO: flexible, model-driven data management for experimental biology. Nature Methods 9(3):245-253. PMID: 22373911. Available at http://www.ncbi.nlm.nih.gov/pubmed/22373911
Alworth SV, Watanabe H, Lee JSJ (2010) Teachable, High-Content Analytics for Live-Cell, Phase Contrast Movies. Journal of Biomolecular Screening 15(8):968-77. PMID: 20639505. Available at http://www.ncbi.nlm.nih.gov/pubmed/20639505
Angres B (2005) Cell microarrays. Expert Review of Molecular Diagnostics 5(5):769-79. PMID: 16149879. Available at http://www.ncbi.nlm.nih.gov/pubmed/16149879
Aydin Z, Murray J, Waterston R, Noble W (2010) Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. BMC Bioinformatics 11(1):84. PMID: 20146825. Available at http://www.ncbi.nlm.nih.gov/pubmed/20146825
Bailey SN, Ali SM, Carpenter AE, Higgins CO, Sabatini DM (2006) Microarrays of lentiviruses for gene function screens in immortalized and primary cells. Nature Methods 3(2):117-22. PMID: 16432521. Available at http://www.ncbi.nlm.nih.gov/pubmed/16432521
Bakal C, Aach J, Church G, Perrimon N (2007) Quantitative morphological signatures define local signaling networks regulating cell morphology. Science 316(5832):1753-6. PMID: 17588932. Available at http://www.ncbi.nlm.nih.gov/pubmed/17588932
Baker M (2010) Cellular imaging: Taking a long, hard look. Nature 466(7310):1137-40. PMID: 20740018. Available at http://www.ncbi.nlm.nih.gov/pubmed/20740018
Ball SG, Shuttleworth A, Kielty CM (2012) Inhibition of Platelet-Derived Growth Factor Receptor Signaling Regulates Oct4 and Nanog Expression, Cell Shape, and Mesenchymal Stem Cell Potency. STEM CELLS 30(3):548-560. PMID: 22213560. Available at http://www.ncbi.nlm.nih.gov/pubmed/22213560
Baltus AE, Menke DB, Hu YC, Goodheart ML, Carpenter AE, de Rooij DG, Page DC (2006) In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication. Nature Genetics 38(12):1430-4. PMID: 17115059. Available at http://www.ncbi.nlm.nih.gov/pubmed/17115059
Baras AS, Solomon A, Davidson R, Moskaluk CA (2011) Loss of VOPP1 overexpression in squamous carcinoma cells induces apoptosis through oxidative cellular injury. Laboratory Investigation 91(8):1170-80. PMID: 21519330. Available at http://www.ncbi.nlm.nih.gov/pubmed/21519330
Barascu A, Le Chalony C, Pennarun G, Genet D, Imam N, Lopez B, Bertrand P (2012) Oxidative stress induces an ATM-independent senescence pathway through p38 MAPK-mediated lamin B1 accumulation. The EMBO Journal 31(5):1080-1094. PMID: 22246186. Available at http://www.ncbi.nlm.nih.gov/pubmed/22246186
Barradas AMC, Fernandes HAM, Groen N, Chai YC, Schrooten J, van de Peppel J, van Leeuwen JPTM, van Blitterswijk CA, de Boer J (2012) A calcium-induced signaling cascade leading to osteogenic differentiation of human bone marrow-derived mesenchymal stromal cells. Biomaterials 33(11):3205-3215. PMID: 22285104. Available at http://www.ncbi.nlm.nih.gov/pubmed/22285104
Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C, Jonathan W, Christine G, Gerald RF (2010) Synthetic Genetic Array (SGA) Analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe. Methods in Enzymology Volume 470:145-79. PMID: 20946810. Available at http://www.ncbi.nlm.nih.gov/pubmed/20946810
Bauer N, Wilsch-Bräuninger M, Karbanová J, Fonseca A-V, Strauss D, Freund D, Thiele C, Huttner WB, Bornhäuser M, Corbeil D (2011) Haematopoietic stem cell differentiation promotes the release of prominin-1/CD133-containing membrane vesicles—a role of the endocytic–exocytic pathway. EMBO Molecular Medicine 3(7):398-409. PMID: 21591261. Available at http://www.ncbi.nlm.nih.gov/pubmed/21591261
Bender A, Young DW, Jenkins JL, Serrano M, Mikhailov D, Clemons PA, Davies JW (2007) Chemogenomic data analysis: prediction of small-molecule targets and the advent of biological fingerprint. Combinatorial Chemistry & High Throughput Screening 10(8):719-31. PMID: 18045083. Available at http://www.ncbi.nlm.nih.gov/pubmed/18045083
Ben-Yaakov K, Dagan SY, Segal-Ruder Y, Shalem O, Vuppalanchi D, Willis DE, Yudin D, Rishal I, Rother F, Bader M, Blesch A, Pilpel Y, Twiss JL, Fainzilber M (2012) Axonal transcription factors signal retrogradely in lesioned peripheral nerve. The EMBO Journal 31(6):1350-1363. PMID: 22246183. Available at http://www.ncbi.nlm.nih.gov/pubmed/22246183
Berge DT, Kurek D, Blauwkamp T, Koole W, Maas A, Eroglu E, Siu RK, Nusse R (2011) Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells. Nature Cell Biology advance online publication. PMID: 21841791. Available at http://dx.doi.org/10.1038/ncb2314
Bernardo D, Marucci L, Menolascina F, Siciliano V (2012) in Synthetic Gene Networks, volume 813, Methods in Molecular Biology: 57-81. PMID: 22083736. Available at http://www.ncbi.nlm.nih.gov/pubmed/22083736
Blackwell E, Ceman S (2011) A new regulatory function of the region proximal to the RGG box in the Fragile X mental retardation protein. Journal of Cell Science 124(18):3060-3065. PMID: 21868366. Available at http://www.ncbi.nlm.nih.gov/pubmed/21868366
Blomberg A (2011) Measuring growth rate in high-throughput growth phenotyping. Current Opinion in Biotechnology 22(1):94-102. PMID: 21095113. Available at http://www.ncbi.nlm.nih.gov/pubmed/21095113
Boehm JS, Hahn WC (2011) Towards systematic functional characterization of cancer genomes. Nature Reviews Genetics 12(7):487-498. PMID: 21681210. Available at http://www.ncbi.nlm.nih.gov/pubmed/21681210
Bonilla-Santiago R, Wu Z, Zhang L, Widmer G (2008) Identification of growth inhibiting compounds in a Giardia lamblia high-throughput screen. Molecular and Biochemical Parasitology 162(2):149-54. PMID: 18796315. Available at http://www.ncbi.nlm.nih.gov/pubmed/18796315
Born A-K, Rottmar M, Lischer S, Pleskova M, Bruinink A, Maniura-Weber K (2009) Correlating cell architecture with osteogenesis: First steps towards live single cell monitoring. European Cells & Materials 18:49-62. PMID: 19856264. Available at http://www.ncbi.nlm.nih.gov/pubmed/19856264
Boutros M, Ahringer J (2008) The art and design of genetic screens: RNA interference. Nature Reviews Genetics 9(7):554-66. PMID: 18521077. Available at http://www.ncbi.nlm.nih.gov/pubmed/18521077
Brankatschk B, Wichert SP, Johnson SD, Schaad O, Rossner MJ and Gruenberg J (2012) Regulation of the EGF Transcriptional Response by Endocytic Sorting. Science Signaling 5(215):ra21. PMID: 22416276. Available at http://www.ncbi.nlm.nih.gov/pubmed/22416276
Brasier AR, Tian B, Jamaluddin M, Kalita MK, Garofalo RP, Lu M (2011) RelA Ser276 Phosphorylation-Coupled Lys310 Acetylation Controls Transcriptional Elongation of Inflammatory Cytokines in Respiratory Syncytial Virus Infection. Journal of Virology 85(22):11752-11769. PMID: 21900162. Available at http://www.ncbi.nlm.nih.gov/pubmed/21900162
Bray M-A, Fraser AN, Hasaka TP, Carpenter AE (2012) Workflow and Metrics for Image Quality Control in Large-Scale High-Content Screens. Journal of Biomolecular Screening 17(2):266-274. PMID: 21956170. Available at http://www.ncbi.nlm.nih.gov/pubmed/21956170
Breitenstein A, Stein S, Holy EW, Camici GG, Lohmann C, Akhmedov A, Spescha R, Elliott PJ, Westphal CH, Matter CM, Lüscher TF, Tanner FC (2011) Sirt1 inhibition promotes in vivo arterial thrombosis and tissue factor expression in stimulated cells. Cardiovascular Research 89(2):464-72. PMID: 20978007. Available at http://www.ncbi.nlm.nih.gov/pubmed/20978007
Bretschneider T (2011) Cartography of spatio-temporal cellular dynamics. Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on:1717-8. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5872735
Bruedigam C, Eijken M, Koedam M, van de Peppel J, Drabek K, Chiba H, van Leeuwen JPTM (2010) A New Concept Underlying Stem Cell Lineage Skewing That Explains the Detrimental Effects of Thiazolidinediones on Bone. Stem Cells 28(5):916-27. PMID: 20213769. Available at http://www.ncbi.nlm.nih.gov/pubmed/20213769
Bruedigam C, Eijken M, Koedam M, Chiba H, van Leeuwen JPTM (2011) Opposing actions of rosiglitazone and resveratrol on mineralization in human vascular smooth muscle cells. Journal of Molecular and Cellular Cardiology 51(5):862-871. PMID: 21816156. Available at http://www.ncbi.nlm.nih.gov/pubmed/21816156
Bulosan M, Pauley KM, Yo K, Chan EKL, Katz J, Peck AB, Cha S (2008) Inflammatory caspases are critical for enhanced cell death in the target tissue of Sjogren's syndrome before disease onset. Immunonology & Cell Biology 87(1):81-90. PMID: 18936772. Available at http://www.ncbi.nlm.nih.gov/pubmed/20719281
Burguera EF, Bitar M, Bruinink A (2010) Novel in vitro co-culture methodology to investigate heterotypic cell-cell interactions. European Cells and Materials 19:166-79. PMID: 20419629. Available at http://www.ncbi.nlm.nih.gov/pubmed/20419629
Burston HE, Davey M, Conibear E (2008) Genome-Wide Analysis of Membrane Transport Using Yeast Knockout Arrays. Membrane Trafficking:1-11. PMID: 19066017. Available at http://www.ncbi.nlm.nih.gov/pubmed/19066017
Buschmann H, Sambade A, Pesquet E, Calder G, Lloyd CW, Lynne C, Phong T (2010) Microtubule Dynamics in Plant Cells. Methods in Cell Biology Volume 97: 373-400. PMID: 20719281. Available at http://www.ncbi.nlm.nih.gov/pubmed/20719281
Buth H, Buttigieg PL, Ostafe R, Rehders M, Dannenmann SR, Schaschke N, Stark HJ, Boukamp P, Brix K (2007) Cathepsin B is essential for regeneration of scratch-wounded normal human epidermal keratinocytes. European Journal of Cell Biology 86(11-12):747-61. PMID: 17651862. Available at http://www.ncbi.nlm.nih.gov/pubmed/17651862
Campeau E, Gobeil S (2011) RNA interference in mammals: behind the screen. Briefings in Functional Genomics 10(4):215-26. PMID: 21791555. Available at http://www.ncbi.nlm.nih.gov/pubmed/21791555
Cargnoni A, Ressel L, Rossi D, Poli A, Arienti D, Lombardi G, Parolini O (2011) Conditioned medium from amniotic mesenchymal tissue cells reduces progression of bleomycin-induced lung fibrosis. Cytotherapy 14(2): 153-161. PMID: 1954836. Available at http://www.ncbi.nlm.nih.gov/pubmed/21954836
Carpenter AE (2007) Image-based chemical screening. Nature Chemical Biology 3(8):461-5. PMID: 17637778. Available at http://www.ncbi.nlm.nih.gov/pubmed/17651862
Carpenter AE (2007) Software opens the door to quantitative imaging. Nature Methods 4(2):120-1. PMID: 17264858. Available at http://www.ncbi.nlm.nih.gov/pubmed/17651862
Carpenter AE (2009) Data analysis: Extracting rich information from images. Methods in Molecular Biology 486:250. PMID: 19347625. Available at http://www.ncbi.nlm.nih.gov/pubmed/19347625
Carpenter AE (2010) High-content screening: FAQs about trends, technologies, and outcomes. Society for Biomolecular Sciences News (47):3. PMID: none. Available at http://www.slas.org/publications/sbs_news.cfm
Carpenter AE (2010) High-content screening: Practical advice, tools, and resources. Society for Biomolecular Sciences News (48):5-6. PMID: none. Available at http://www.slas.org/publications/sbs_news.cfm
Carpenter AE. (2011) Extracting biomedically important information from large, automated imaging experiments. Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on:1723-6. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5872737
Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM (2006) CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biology 7(10):R100. PMID: 17076895. Available at http://www.ncbi.nlm.nih.gov/pubmed/17076895
Challa TD, Beaton N, Arnold M, Rudofsky G, Langhans W, Wolfrum C (2012) Regulation of Adipocyte Formation by GLP-1/GLP-1R Signaling. Journal of Biological Chemistry 287(9):6421-6430. PMID: 22207759. Available at http://www.ncbi.nlm.nih.gov/pubmed/22207759
Chang H, Parvin B. (2010) Multiphase level set for automated delineation of membrane-bound macromolecules. Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on:165-8. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5490389
Charlot D, Campa V, Azimi B, Mercola M, Ingermanson R, McDonough PM, Price JH (2008) Automated calcium measurements in live cardiomyocytes. IEEE Symposium on Biomedical Imaging (ISBI) 2008:316-9. PMID: none. Available at http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4534844
Chaudhury AR, Iychettira KK, Iyer R, Sreedevi A (2011). Diagnosis of Invasive Ductal Carcinoma using image processing techniques in Image Information Processing (ICIIP), 2011 International Conference on:1-6. PMID: none. Available at http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6108877&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6108877
Chen C, Li H, Zhou X, Wong ST (2008) Constraint factor graph cut-based active contour method for automated cellular image segmentation in RNAi screening. Journal of Microscopy 230(Pt 2):177-91. PMID: 18445146. Available at http://www.ncbi.nlm.nih.gov/pubmed/18445146
Chen RE, Patterson JC, Goupil LS, Thorner J (2010) Dynamic Localization of Fus3 Mitogen-Activated Protein Kinase Is Necessary To Evoke Appropriate Responses and Avoid Cytotoxic Effects. Molecular Cell Biology 30(17):4293-307. PMID: 20584989. Available at http://www.ncbi.nlm.nih.gov/pubmed/20584989
Chen Xiao L, Nam J-O, Jean C, Lawson C, Walsh Colin T, Goka E, Lim S-T, Tomar A, Tancioni I, Uryu S, Guan J-L, Acevedo Lisette M, Weis Sara M, Cheresh DA, Schlaepfer DcpD (2012) VEGF-Induced Vascular Permeability Is Mediated by FAK. Developmental Cell 22(1):146-157. PMID: 22264731. Available at http://www.ncbi.nlm.nih.gov/pubmed/22264731
Chen X-W, Leto D, Xiong T, Yu G, Cheng A, Decker S, Saltiel AR (2011) A Ral GAP complex links PI 3-kinase/Akt signaling to RalA activation in insulin action. Molecular Biology of the Cell 22(1):141-52. PMID: 21148297. Available at http://www.ncbi.nlm.nih.gov/pubmed/21148297
Chen Z, Kolokoltsov AA, Wang J, Adhikary S, Lorinczi M, Elferink LA, Davey RA (2012) GRB2 Interaction with the Ecotropic Murine Leukemia Virus Receptor, mCAT-1, Controls Virus Entry and Is Stimulated by Virus Binding. Journal of Virology 86(3): 1421-1432. PMID: 22090132. Available at http://www.ncbi.nlm.nih.gov/pubmed/22090132
Chi KR (2008) Imaging and detection: focusing on software. Nature Methods 5(7):651-8. PMID: none. Available at http://dx.doi.org/10.1038/nmeth0708-651
Chiang S-H, Bazuine M, Lumeng CN, Geletka LM, Mowers J, White NM, Ma J-T, Zhou J, Qi N, Westcott D, Delproposto JB, Blackwell TS, Yull FE, Saltiel AR (2009) The Protein Kinase IKK[var epsilon] Regulates Energy Balance in Obese Mice. Cell 138(5):961-75. PMID: 19737522. Available at http://www.ncbi.nlm.nih.gov/pubmed/19737522
Chin L, Hahn WC, Getz G, Meyerson M (2011) Making sense of cancer genomic data. Genes & Development 25(6):534-55. PMID: 21406553. Available at http://www.ncbi.nlm.nih.gov/pubmed/21406553
Chun JY, Kang HK, Jeong L, Kang YO, Oh J-E, Yeo I-S, Jung SY, Park WH, Min B-M (2010) Epidermal cellular response to poly(vinyl alcohol) nanofibers containing silver nanoparticles. Colloids and Surfaces B: Biointerfaces 78(2):334-42. PMID: 20399628. Available at http://www.ncbi.nlm.nih.gov/pubmed/20399628
Chung TD (2008) The Management of Chemical and Biological Information. Current Opinion in Drug Discovery & Development 11(3):299-300. PMID: none. Available at http://www.biomedcentral.com/1367-6733/11/299
Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS (2012) Genome-wide analysis of long noncoding RNA stability. Genome Research, epub ahead of print. PMID: 22406755. Available at http://www.ncbi.nlm.nih.gov/pubmed/22406755
Coelho L, Glory-Afshar E, Kangas J, Quinn S, Shariff A, Murphy R. (2010) Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns Linking Literature, Information, and Knowledge for Biology. Lecture Notes in Computer Science 6004:8-18. PMID: none. Available at http://dx.doi.org/10.1007/978-3-642-13131-8_2
Colantonio S, Martinelli M, Salvetti O, Gurevich I, Trusova Y (2008) Cell image analysis ontology. Pattern Recognition and Image Analysis 18(2):332-41. PMID: none. Available at http://dx.doi.org/10.1134/S1054661808020211
Conery AR, Harlow E (2010) High-throughput screens in diploid cells identify factors that contribute to the acquisition of chromosomal instability. Proceedings of the National Academy of Sciences. PMID: 20713694. Available at http://www.ncbi.nlm.nih.gov/pubmed/20713694
Conrad C, Gerlich DW (2010) Automated microscopy for high-content RNAi screening. Journal of Cell Biology 188(4):453-61. PMID: 20176920. Available at http://www.ncbi.nlm.nih.gov/pubmed/20176920
Conrad C, Wunsche A, Tan TH, Bulkescher J, Sieckmann F, Verissimo F, Edelstein A, Walter T, Liebel U, Pepperkok R, Ellenberg J (2011) Micropilot: automation of fluorescence microscopy-based imaging for systems biology. Nat Meth 8(3):246-9. PMID: 21258339. Available at http://www.ncbi.nlm.nih.gov/pubmed/21258339
Cowen LE, Carpenter AE, Matangkasombut O, Fink GR, Lindquist S (2006) Genetic architecture of Hsp90-dependent drug resistance. Eukaryotic Cell 5(12):2184-8. PMID: 17056742. Available at http://www.ncbi.nlm.nih.gov/pubmed/17056742
Cowen LE, Lindquist S (2005) Hsp90 potentiates the rapid evolution of new traits: drug resistance in diverse fungi. Science 309(5744):2185-9. PMID: 16195452. Available at http://www.ncbi.nlm.nih.gov/pubmed/17056742
Crawford KE, Kalionis B, Stevenson JL, Brennecke SP, Gude NM (2012) Calreticulin has opposing effects on the migration of human trophoblast and myometrial endothelial cells. Placenta, epub ahead of print. PMID: 22377355. Available at http://www.ncbi.nlm.nih.gov/pubmed/22377355
Creton R (2009) Automated analysis of behavior in zebrafish larvae. Behavioural Brain Research 203(1):127-36. PMID: 19409932. Available at http://www.ncbi.nlm.nih.gov/pubmed/19409932
Dai C, Whitesell L, Rogers AB, Lindquist S (2007) Heat shock factor 1 is a powerful multifaceted modifier of carcinogenesis. Cell 130(6):1005-18. PMID: 17889646. Available at http://www.ncbi.nlm.nih.gov/pubmed/17889646
Dai Y, Dudek NL, Li Q, Fowler SC, Muma NA (2009) Striatal Expression of a Calmodulin Fragment Improved Motor Function, Weight Loss, and Neuropathology in the R6/2 Mouse Model of Huntington's Disease. Journal of Neuroscience 29(37):11550-9. PMID: 19759302. Available at http://www.ncbi.nlm.nih.gov/pubmed/19759302
Danovi D, Folarin AA, Baranowski B, Pollard SM (2012) in Methods in Enzymology 506:311-329. PMID: 22341231. Available at http://www.ncbi.nlm.nih.gov/pubmed/22341231
Danuser G (2011) Computer Vision in Cell Biology. Cell 147(5):973-978. PMID: 22118455. Available at http://www.ncbi.nlm.nih.gov/pubmed/22118455
Dauth S, Sirbulescu R, Jordans S, Rehders M, Avena L, Oswald J, Lerchl A, Saftig P, Brix K (2011) Cathepsin K deficiency in mice induces structural and metabolic changes in the central nervous system that are associated with learning and memory deficits. BMC Neuroscience 12(1):74. PMID: 21794126. Available at http://www.ncbi.nlm.nih.gov/pubmed/21794126
Davies ML, Burrows HD, Cheng S, Moraán MC, Miguel MdGa, Douglas P (2009) Cationic Fluorene-Based Conjugated Polyelectrolytes Induce Compaction and Bridging in DNA. Biomacromolecules 10(11):2987-97. PMID: 19817426. Available at http://www.ncbi.nlm.nih.gov/pubmed/19817426
de Cecco M, Jeyapalan J, Zhao X, Tamamori-Adachi M, Sedivy JM (2011) Nuclear protein accumulation in cellular senescence and organismal aging revealed with a novel single-cell resolution fluorescence microscopy assay. Aging 3(10):995-967. PMID: 22006542. Available at http://www.ncbi.nlm.nih.gov/pubmed/22006542
De Vos WH, Van Neste L, Dieriks B, Joss GH, Van Oostveldt P (2010) High content image cytometry in the context of subnuclear organization. Cytometry Part A 77A(1):64-75. PMID: 19821512. Available at http://www.ncbi.nlm.nih.gov/pubmed/19821512
De Vylder J, Rooms F, Philips W. (2010) Segmentation of Cell Nuclei in Arabidopsis Thaliana Roots. Image Analysis and Recognition 6112:207-16. PMID:none. Available at http://www.springerlink.com/content/a705u0537573l883
De Vylder J, Philips W (2011) Computational efficient segmentation of cell nuclei in 2D and 3D fluorescent micrographs. Proc SPIE 7902. PMID: none. Available at http://spie.org/x648.html?product_id=872725
Deasy BM, Chirieleison SM, Witt AM, Peyton MJ, Bissell TA (2010) Tracking Stem Cell Function with Computers Via Live Cell Imaging: Identifying Donor Variability in Human Stem Cells. Operative Techniques in Orthopaedics 20(2):127-35. PMID: none. Available at http://www.sciencedirect.com/science/article/B7596-505WSJ3-D/2/9e5547217a713d994ac86ce598a92d8c
Dekanty A, Romero NM, Bertolin AP, Thomas MG, Leishman CC, Perez-Perri JI, Boccaccio GL, Wappner P (2010) Drosophila genome-wide RNAi screen identifies multiple regulators of HIF-dependent transcription in hypoxia. PLoS Genet 6(6):e1000994. PMID: 20585616. Available at http://www.ncbi.nlm.nih.gov/pubmed/20585616
Dennemarker J, Lohmuller T, Muller S, Aguilar SV, Tobin DJ, Peters C, Reinheckel T (2010) Impaired turnover of autophagolysosomes in cathepsin L deficiency. Biological Chemistry 391(8):913-22. PMID: 20536383. Available at http://www.ncbi.nlm.nih.gov/pubmed/20536383
Dever SM, Golding SE, Rosenberg E, Adams BR, Idowu MO, Quillin JM, Valerie N, Xu B, Povirk LF, Valerie K (2011) Mutations in the BRCT binding site of BRCA1 result in hyper-recombination. Aging 3(5):515-32. PMID: 21666281. Available at http://www.ncbi.nlm.nih.gov/pubmed/21666281
Díaz-Mochón JJ, Tourniaire G, Bradley M (2006) Microarray platforms for enzymatic and cell-based assays. Chemical Society Reviews 36:449-57. PMID: 17325784. Available at http://www.ncbi.nlm.nih.gov/pubmed/17325784
Dieriks B, De Vos WH, Derradji H, Baatout S, Van Oostveldt P (2010) Medium-mediated DNA repair response after ionizing radiation is correlated with the increase of specific cytokines in human fibroblasts. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 687(1-2):40-8. PMID: 20080111. Available at http://www.ncbi.nlm.nih.gov/pubmed/20080111
Dittmar J, Reid R, Rothstein R (2010) ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data. BMC Bioinformatics 11(1):353. PMID: 20584323. Available at http://www.ncbi.nlm.nih.gov/pubmed/20584323
Dobbelaere J, Josue F, Suijkerbuijk S, Baum B, Tapon N, Raff J (2008) A Genome-Wide RNAi Screen to Dissect Centriole Duplication and Centrosome Maturation in Drosophila. PLoS Biol 6(9):e224. PMID: 18798690. Available at http://www.ncbi.nlm.nih.gov/pubmed/18798690
Downey M, Vance KW, Bretschneider T. (2011) LineageTracker: A statistical scoring method for tracking cell lineages in large cell populations with low temporal resolution. Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on:1913-6. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5872783
Downey MJ, Jeziorska DM, Ott S, Tamai TK, Koentges G, Vance KW, Bretschneider T (2011) Extracting Fluorescent Reporter Time Courses of Cell Lineages from High-Throughput Microscopy at Low Temporal Resolution. PLoS ONE 6(12): e27886. PMID: 22194797. Available at http://www.ncbi.nlm.nih.gov/pubmed/22194797
Drewitz M, Helbling M, Fried N, Bieri M, Moritz W, Lichtenberg J, Kelm JM (2011) Towards automated production and drug sensitivity testing using scaffold-free spherical tumor microtissues. Biotechnology Journal 6(12):1488-1496. PMID: 22102438. Available at http://www.ncbi.nlm.nih.gov/pubmed/22102438
Du C-J, Marcello M, Spiller DG, White MRH, Bretschneider T (2010) Interactive segmentation of clustered cells via geodesic commute distance and constrained density weighted Nyström method. Cytometry Part A 77A(12):1137-47. PMID: 21069796. Available at http://www.ncbi.nlm.nih.gov/pubmed/21069796
Du G, Ravetto A, Fang Q, den Toonder J (2011) Cell types can be distinguished by measuring their viscoelastic recovery times using a micro-fluidic device. Biomedical Microdevices 13(1):29-40. PMID: 20838903. Available at http://www.ncbi.nlm.nih.gov/pubmed/20838903
Du X, Dua S (2010) Segmentation of Fluorescence Microscopy Cell Images using Unsupervised Data Mining. Open Medical Informatics Journal 4:41-9. PMID: 21116323. Available at http://www.ncbi.nlm.nih.gov/pubmed/2116323
Dugan JM, Gough JE, Eichhorn SJ (2010) Directing the Morphology and Differentiation of Skeletal Muscle Cells Using Oriented Cellulose Nanowhiskers. Biomacromolecules 11(9):2498-504. PMID: 20690614. Available at http://www.ncbi.nlm.nih.gov/pubmed/20690614
Dzyubachyk O, van Cappellen WA, Essers J, Niessen WJ, Meijering E (2010) Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy. IEEE Transactions on Medical Imaging 29(3):852-67. PMID: 20199920. Available at http://www.ncbi.nlm.nih.gov/pubmed/20199920
Echeverri CJ, Perrimon N (2006) High-throughput RNAi screening in cultured cells: a user's guide Nature Reviews Genetics 7(5):373-84. PMID: 16607398. Available at http://www.ncbi.nlm.nih.gov/pubmed/16607398
Eggert US, Mitchison TJ (2006) Small molecule screening by imaging. Current Opinion in Chemical Biology 10(3):232-7. PMID: 16682248. Available at http://www.ncbi.nlm.nih.gov/pubmed/16682248
Ehrlich DJ, McKenna BK, Evans JG, Belkina AC, Denis GV, Sherr DH, Cheung MC. (2011) Parallel Imaging Microfluidic Cytometer. Methods in Cell Biology Volume 102:49-75. PMID: none. Available at http://dx.doi.org/10.1007/978-3-642-13131-8_2
Elkabets M, Gifford AM, Scheel C, Nilsson B, Reinhardt F, Bray M-A, Carpenter AE, Jirstrom K, Magnusson K, Ebert BL, Ponten F, Weinberg RA, McAllister SS (2011) Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice. Journal of Clinical Investigation 121(2):784-99. PMID: 21266779. Available at http://www.ncbi.nlm.nih.gov/pubmed/21266779
Ellis S, Akers RM, Capuco AV, Safayi S (2011) Bovine mammary epithelial cell lineages and parenchymal development. Journal of Animal Science, epub ahead of print. PMID: 22100590. Available at http://www.ncbi.nlm.nih.gov/pubmed/22100590
Ersoy I, Palaniappan K (2008) Multi-feature contour evolution for automatic live cell segmentation in time lapse imagery. Engineering in Medicine and Biology Society, EMBS 2008 30th Annual International Conference of the IEEE:371-4. PMID: 19162670. Available at http://www.ncbi.nlm.nih.gov/pubmed/19162670
Ettinger AW, Wilsch-Brauninger M, Marzesco A-M, Bickle M, Lohmann A, Maliga Z, Karbanova J, Corbeil D, Hyman AA, Huttner WB (2011) Proliferating versus differentiating stem and cancer cells exhibit distinct midbody-release behaviour. Nature Communications 2:503. PMID: 22009035. Available at http://www.ncbi.nlm.nih.gov/pubmed/22009035
Fagerberg L, Stadler C, Skogs M, Hjelmare M, Jonasson K, Wiking M, Åbergh A, Uhlén M, Lundberg E (2011) Mapping the Subcellular Protein Distribution in Three Human Cell Lines. Journal of Proteome Research 10(8):3766-3777. PMID: 21675716. Available at http://www.ncbi.nlm.nih.gov/pubmed/21675716
Faghiri Z, Santiago RB, Wu Z, Widmer G (2011) High-throughput screening in suboptimal growth conditions identifies agonists of Giardia lamblia proliferation. Parasitology 138(02):194-200. PMID: 20696097. Available at http://www.ncbi.nlm.nih.gov/pubmed/20696097
Falguières T, Castle D, Gruenberg J (2012) Regulation of the MVB Pathway by SCAMP3. Traffic 13(1): 131-142. PMID: 21951651. Available at http://www.ncbi.nlm.nih.gov/pubmed/21951651
Falschlehner C, Steinbrink S, Erdmann G, Boutros M (2010) High-throughput RNAi screening to dissect cellular pathways: A how-to guide. Journal of Biotechnology 5(4):368-76. PMID: 20349460. Available at http://www.ncbi.nlm.nih.gov/pubmed/20349460
Fang RC, Kryger ZB, Buck Ii DW, De La Garza M, Galiano RD, Mustoe TA (2010) Limitations of the db/db mouse in translational wound healing research: Is the NONcNZO10 polygenic mouse model superior? Wound Repair and Regeneration 18(6):605-13. PMID: 21124847. Available at http://www.ncbi.nlm.nih.gov/pubmed/21124847
Fenistein D, Lenseigne B, Christophe T, Brodin P, Genovesio A (2008) A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening. Cytometry Part A 73A(10):958-64. PMID: 18752283. Available at http://www.ncbi.nlm.nih.gov/pubmed/18752283
Ficarra E, Cataldo SD, Acquaviva A, Macii E (2011) Automated Segmentation of Cells With IHC Membrane Staining. Biomedical Engineering, IEEE Transactions on 58(5):1421-9. PMID: 21245003. Available at http://www.ncbi.nlm.nih.gov/pubmed/21245003
Fiordelisio T, Jimenez N, Baba S, Shiba K, Hernandez-Cruz A (2007) Immunoreactivity to neurofilaments in the rodent anterior pituitary is associated with the expression of alpha 1A protein subunits of voltage-gated Ca2+ channels. Journal of Neuroendocrinology 19(11):870-81. PMID: 17927665. Available at http://www.ncbi.nlm.nih.gov/pubmed/18752283
Fjeldbo CS, Misund K, Gunther CC, Langaas M, Steigedal TS, Thommesen L, Laegreid A, Bruland T (2008) Functional studies on transfected cell microarray analysed by linear regression modelling. Nucleic Acids Res 36(15):e97. PMID: 18628295. Available at http://www.ncbi.nlm.nih.gov/pubmed/18628295
Forero MG, Pennack JA, Learte AR, Hidalgo A (2009) DeadEasy Caspase: Automatic Counting of Apoptotic Cells in Drosophila. PLoS ONE 4(5):e5441. PMID: 19415123. Available at http://www.ncbi.nlm.nih.gov/pubmed/19415123
Freedman BS, Miller KE, Heald R (2010) Xenopus Egg Extracts Increase Dynamics of Histone H1 on Sperm Chromatin. PLoS ONE 5(9):e13111. PMID: 20927327. Available at http://www.ncbi.nlm.nih.gov/pubmed/20927327
Freund A, Patil CK, Campisi J (2011) p38MAPK is a novel DNA damage response-independent regulator of the senescence-associated secretory phenotype. The EMBO Journal 30(8):1536-1548. PMID: 21399611. Available at http://www.ncbi.nlm.nih.gov/pubmed/21399611
Frohlich EM, Zhang X, Charest JL (2012) The use of controlled surface topography and flow-induced shear stress to influence renal epithelial cell function. Integrative Biology 4(1):75-83. PMID: 22139064. Available at http://www.ncbi.nlm.nih.gov/pubmed/22139064
Fuller CJ, Straight AF (2010) Image analysis benchmarking methods for high-content screen design. Journal of Microscopy 238(2):145-61. PMID: 20529062. Available at http://www.ncbi.nlm.nih.gov/pubmed/20529062
Garcia MG, Bayo J, Bolontrade MF, Sganga L, Malvicini M, Alaniz L, Aquino JB, Fiore E, Rizzo MM, Rodriguez A, Lorenti A, Andriani O, Podhajcer O, Mazzolini G (2011) Hepatocellular Carcinoma Cells and Their Fibrotic Microenvironment Modulate Bone Marrow-Derived Mesenchymal Stromal Cell Migration in Vitro and in Vivo. Molecular Pharmaceutics 8(5):1538-1548. PMID: 21770423. Available at http://www.ncbi.nlm.nih.gov/pubmed/21770423
Gasparini L, Anthony Crowther R, Martin KR, Berg N, Coleman M, Goedert M, Spillantini MG (2009) Tau inclusions in retinal ganglion cells of human P301S tau transgenic mice: Effects on axonal viability. Neurobiology of Aging 32(3):419-33. PMID: 19356824. Available at http://www.ncbi.nlm.nih.gov/pubmed/19356824
Gasparri F (2010) Cell-based assays - Informa Life Sciences' fifth annual conference. iDrugs 13(8):523-6. PMID: 20721820. Available at http://www.ncbi.nlm.nih.gov/pubmed/20721820
Gebäck T, Koumoutsakos P (2009) Edge detection in microscopy images using curvelets. BMC Bioinformatics 10(1):75. PMID: 19257905. Available at http://www.ncbi.nlm.nih.gov/pubmed/19257905
Gebäck T, Schulz MMP, Koumoutsakos P, Detmar M (2009) TScratch: a novel and simple software tool for automated analysis of monolayer wound healing assays. Biotechniques 46(4):265-+. PMID: 19450233. Available at http://www.ncbi.nlm.nih.gov/pubmed/19257905
Geiger R, Gautschi M, Thor F, Hayer A, Helenius A (2011) Folding, Quality Control, and Secretion of Pancreatic Ribonuclease in Live Cells. Journal of Biological Chemistry 286(7):5813-22. PMID: 21156800 Available at http://www.ncbi.nlm.nih.gov/pubmed/21156800
Georgescu W, Wikswo JP, Quaranta V (2012) CellAnimation: an open source MATLAB framework for microscopy assays. Bioinformatics 28(1):138-139. PMID: 22121157. Available at http://www.ncbi.nlm.nih.gov/pubmed/22121157
Gilbert DF, Meinhof T, Pepperkok R, Runz H (2009) DetecTiff(C): A Novel Image Analysis Routine for High-Content Screening Microscopy. Journal of Biomolecular Screen:1087057109339523. PMID: 19641223. Available at http://www.ncbi.nlm.nih.gov/pubmed/19641223
Giorgetti L, Zanardi A, Venturini S, Carbone R (2007) ImmunoCell-Array: a novel technology for pathway discovery and cell profiling. Expert Review of Proteomics 4(5):609-16. PMID: 17941816. Available at http://www.ncbi.nlm.nih.gov/pubmed/17941816
Girotti MR, Fernandez M, Lopez JA, Camafeita E, Fernandez EA, Albar JP, Benedetti LG, Valacco MP, Brekken RA, Podhajcer OL, Llera AS (2011) SPARC Promotes Cathepsin B-Mediated Melanoma Invasiveness through a Collagen I/[alpha]2[beta]1 Integrin Axis. Journal of Investigative Dermatology. PMID: 21850018. Available at http://www.ncbi.nlm.nih.gov/pubmed/21850018
Glaß M, Moller B, Zirkel A, Wachter K, Huttelmaier S, Posch S. (2011) Scratch Assay Analysis with Topology-Preserving Level Sets and Texture Measures. Lecture Notes in Computer Science 6669:100-8. PMID: none. Available at http://dx.doi.org/10.1007/978-3-642-21257-4_13
Glory E, Murphy RF (2007) Automated subcellular location determination and high-throughput microscopy. Developmental Cell 12(1):7-16. PMID: 17199037. Available at http://www.ncbi.nlm.nih.gov/pubmed/17941816
Gombos I, Crul T, Piotto S, Güngör B, Török Z, Balogh G, Péter M, Slotte JP, Campana F, Pilbat A-M, Hunya Á, Tóth N, Literati-Nagy Z, Vígh L, Jr., Glatz A, Brameshuber M, Schütz GJ, Hevener A, Febbraio MA, Horváth I, Vígh L (2011) Membrane-Lipid Therapy in Operation: The HSP Co-Inducer BGP-15 Activates Stress Signal Transduction Pathways by Remodeling Plasma Membrane Rafts. PLoS ONE 6(12):e28818. PMID: 22174906. Available at http://www.ncbi.nlm.nih.gov/pubmed/22174906
Gong D, Ferrell JE, Jr. (2010) The Roles of Cyclin A2, B1, and B2 in Early and Late Mitotic Events. Molecular Biology of the Cell 21(18):3149-61. PMID: 20660152. Available at http://www.ncbi.nlm.nih.gov/pubmed/20660152
Gordon A, Colman-Lerner A, Chin TE, Benjamin KR, Yu RC, Brent R (2007) Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nature Methods 4(2):175-81. PMID: 17237792. Available at http://www.ncbi.nlm.nih.gov/pubmed/17941816
Grecco HE, Roda-Navarro P, Fengler S, Bastiaens PIH (2011) in Methods in Enzymology 500:37-58. PMID: 21943891. Available at http://www.ncbi.nlm.nih.gov/pubmed/21943891
Greco TM, Yu F, Guise AJ, Cristea IM (2011) Nuclear Import of Histone Deacetylase 5 by Requisite Nuclear Localization Signal Phosphorylation. Molecular & Cellular Proteomics 10(2). PMID: 21081666. Available at http://www.ncbi.nlm.nih.gov/pubmed/21081666
Grimes AC, Erwin KN, Stadt HA, Hunter GL, Gefroh HA, Tsai HJ, Kirby ML (2008) PCB126 exposure disrupts zebrafish ventricular and branchial but not early neural crest development. Toxicological Sciences 106(1):193-205. PMID: 18660518. Available at http://www.ncbi.nlm.nih.gov/pubmed/18660518
Gromicho M, Dinis J, Magalhaes M, Fernandes AR, Tavares P, Laires A, Rueff J, Rodrigues AS (2011) Development of imatinib and dasatinib resistance: dynamics of expression of drug transporters ABCB1, ABCC1, ABCG2, MVP, and SLC22A1. Leukemia & Lymphoma 2011:1-11. PMID: 21663515. Available at http://www.ncbi.nlm.nih.gov/pubmed/21663515
Grüning N-M, Rinnerthaler M, Bluemlein K, Mülleder M, Wamelink Mirjam MC, Lehrach H, Jakobs C, Breitenbach M, Ralser M (2011) Pyruvate Kinase Triggers a Metabolic Feedback Loop that Controls Redox Metabolism in Respiring Cells. Cell Metabolism 14(3):415-427. PMID: 21907146. Available at http://www.ncbi.nlm.nih.gov/pubmed/21907146
Gudla PR, Nandy K, Collins J, Meaburn KJ, Misteli T, Lockett SJ (2008) A high-throughput system for segmenting nuclei using multiscale techniques. Cytometry Part A 0(0):0. PMID: 18338778. Available at http://www.ncbi.nlm.nih.gov/pubmed/18660518
Guo G, Huang Y, Humphreys P, Wang X, Smith A (2011) A PiggyBac-Based Recessive Screening Method to Identify Pluripotency Regulators. PLoS ONE 6(4):e18189. PMID: 21533166. Available at http://www.ncbi.nlm.nih.gov/pubmed/21533166
Gurda GT, Crozier SJ, Ji B, Ernst SA, Logsdon CD, Rothermel BA, Williams JA (2010) Regulator of Calcineurin 1 Controls Growth Plasticity of Adult Pancreas. Gastroenterology 139(2):609-19.e6. PMID: 20438729. Available at http://www.ncbi.nlm.nih.gov/pubmed/20438729
Guryev O, Abrams B, Lomas C, Nasraty Q, Park E, Dubrovsky T (2011) Control of the Fluorescence of Dye–Antibody Conjugates by (2-Hydroxypropyl)-β-cyclodextrin in Fluorescence Microscopy and Flow Cytometry. Analytical Chemistry 83(18):7109-7114. PMID: 21846137. Available at http://www.ncbi.nlm.nih.gov/pubmed/21846137
Haghighat A-C, Seveau S (2010) Quantification of host-microbe interactions by automated fluorescence microscopy. Journal of Immunological Methods 352(1-2):186-91. PMID: 19931271. Available at http://www.ncbi.nlm.nih.gov/pubmed/19931271
Hahn WC, Dunn IF, Kim SY, Schinzel AC, Firestein R, Guney I, Boehm JS (2009) Integrative genomic approaches to understanding cancer. Biochimica et Biophysica Acta (BBA) - General Subjects 1790(6):478-84. PMID: 19364473. Available at http://www.ncbi.nlm.nih.gov/pubmed/19364473
Hamilton N (2009) Quantification and its Applications in Fluorescent Microscopy Imaging. Traffic 10(8):951-61. PMID: 19500318. Available at http://www.ncbi.nlm.nih.gov/pubmed/19364473
Han F, Liang P, Wang F, Zeng L, Zhang B (2011) Automated Analysis of Time-Lapse Imaging of Nuclear Translocation by Retrospective Strategy and Its Application to STAT1 in HeLa Cells. PLoS ONE 6(11):e27454. PMID: 22125613. Available at http://www.ncbi.nlm.nih.gov/pubmed/22125613
Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MH, Parvin B (2010) Multidimensional Profiling of Cell Surface Proteins and Nuclear Markers. IEEE/ACM Transactions on Computational Biology and Bioinformatics 7(1):80-90. PMID: 20150670. Available at http://www.ncbi.nlm.nih.gov/pubmed/20150670
Handel N, Brockel A, Heindl M, Klein E, Uhlig HH (2009) Cell-Cell-Neighborhood Relations in Tissue Sections-A Quantitative Model for Tissue Cytometry. Cytometry Part A 75A(4):356-61. PMID: 19184996. Available at http://www.ncbi.nlm.nih.gov/pubmed/19364473
Haney SA (2007) Expanding the repertoire of RNA interference screens for developing new anticancer drug targets. Expert Opinion on Therapeutic Targets 11(11):1429-41. PMID: 18028008. Available at http://www.ncbi.nlm.nih.gov/pubmed/18028008
Haney SA, LaPan P, Pan J, Zhang J (2006) High-content screening moves to the front of the line. Drug Discovery Today 11(19-20):889-94. PMID: 16997138. Available at http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve
Hang T-C, Lauffenburger DA, Griffith LG, Stolz DB (2012) Lipids promote survival, proliferation, and maintenance of differentiation of rat liver sinusoidal endothelial cells in vitro. American Journal of Physiology - Gastrointestinal and Liver Physiology 302(3):G375-G388. PMID: 22075778. Available at http://www.ncbi.nlm.nih.gov/pubmed/22075778
Harder N, Mora-Bermúdez F, Godinez WJ, W√ºnsche A, Eils R, Ellenberg J, Rohr K (2009) Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time. Genome Research 19(11):2113-24. PMID: 19797680. Available at http://www.ncbi.nlm.nih.gov/pubmed/19797680
Harris MP, Kim E, Weidow B, Wikswo JP, Quaranta V (2008) Migration of isogenic cell lines quantified by dynamic multivariate analysis of single-cell motility. Cell Adhesion & Migration 2(2):127-36. PMID: 19271355. Available at http://www.ncbi.nlm.nih.gov/pubmed/19271355
Hart T, Zhao A, Garg A, Bolusani S, Marcotte EM (2009) Human Cell Chips: Adapting DNA Microarray Spotting Technology to Cell-Based Imaging Assays. PLoS ONE 4(10):e7088. PMID: 19862318. Available at http://www.ncbi.nlm.nih.gov/pubmed/19862318
Hartig SM, Newberg JY, Bolt MJ, Szafran AT, Marcelli M, Mancini MA. (2011) Automated Microscopy and Image Analysis for Androgen Receptor Function Androgen Action. Methods in Molecular Biology 776:313-31. PMID: 21796534. Available at http://www.ncbi.nlm.nih.gov/pubmed/21796534
Hartwell KA, Muir B, Reinhardt F, Carpenter AE, Sgroi DC, Weinberg RA (2006) The Spemann organizer gene, Goosecoid, promotes tumor metastasis. PNAS 103(50):18969-74. PMID: 17142318. Available at http://www.ncbi.nlm.nih.gov/pubmed/17142318
Hasegawa Y, Murph M, Yu S, Tigyi G, Mills GB (2008) Lysophosphatidic acid (LPA)-induced vasodilator-stimulated phosphoprotein mediates lamellipodia formation to initiate motility in PC-3 prostate cancer cells. Molecular Oncology 2(1):54-69. PMID: 19081821. Available at http://www.ncbi.nlm.nih.gov/pubmed/19081821
Hassanein M, Weidow B, Koehler E, Bakane N, Garbett S, Shyr Y, Quaranta V (2011) Development of High-Throughput Quantitative Assays for Glucose Uptake in Cancer Cell Lines. Molecular Imaging and Biology 13(5): 840-852.PMID: 20809209. Available at http://www.ncbi.nlm.nih.gov/pubmed/20809209
Hassenklöver T, Schwartz P, Schild D, Manzini I (2009) Purinergic Signaling Regulates Cell Proliferation of Olfactory Epithelium Progenitors. Stem Cells 9999(999A):N/A. PMID: 19544419. Available at http://www.ncbi.nlm.nih.gov/pubmed/19544419
Hatano A, Chiba H, Moesa HA, Taniguchi T, Nagaie S, Yamanegi K, Takai-Igarashi T, Tanaka H, Fujibuchi W (2011) CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses. Database 2011. PMID: 22039163. Available at http://www.ncbi.nlm.nih.gov/pubmed/22039163
Haudenschild DR, Chen J, Pang N, Lotz MK, D'Lima DD (2010) Rho kinase–dependent activation of SOX9 in chondrocytes. Arthritis & Rheumatism 62(1):191-200. PMID: 20039424. Available at http://www.ncbi.nlm.nih.gov/pubmed/20039424
Helmy I, Abdel Azim A (2012) Efficacy of ImageJ in the assessment of apoptosis. Diagnostic Pathology 7(1):15. PMID: 22309648. Available at http://www.ncbi.nlm.nih.gov/pubmed/22309648
Hemmer E, Kohl Y, Colquhoun V, Thielecke H, Soga K, Mathur S (2010) Probing Cytotoxicity of Gadolinium Hydroxide Nanostructures. Journal of Physical Chemistry B 114(12):4358-65. PMID: 20218658. Available at http://www.ncbi.nlm.nih.gov/pubmed/20218658
Henriksson S, Nilsson M (2012) in Single-Cell Analysis, volume 853, Methods in Molecular Biology:95-103. PMID: 22323143. Available at http://www.ncbi.nlm.nih.gov/pubmed/22323143
Hernández Moresino RD, Gonçalves RJ, Helbling EW (2011) Sublethal effects of ultraviolet radiation on crab larvae of Cyrtograpsus altimanus. Journal of Experimental Marine Biology and Ecology 407(2):363-369. PMID: none. Available at http://www.sciencedirect.com/science/article/pii/S002209811100342X
Hessman CJ, Bubbers EJ, Billingsley KG, Herzig DO, Wong MH (2012) Loss of expression of the cancer stem cell marker aldehyde dehydrogenase 1 correlates with advanced-stage colorectal cancer. The American Journal of Surgery0). PMID: 22405917. Available at http://www.ncbi.nlm.nih.gov/pubmed/22405917
Hoesli CA, Raghuram K, Kiang RLJ, Mocinecová D, Hu X, Johnson JD, Lacík I, Kieffer TJ, Piret JM (2011) Pancreatic cell immobilization in alginate beads produced by emulsion and internal gelation. Biotechnology and Bioengineering 108(2):424-434. PMID: 20939004. Available at http://www.ncbi.nlm.nih.gov/pubmed/20939004
Hoffman EM, Miller KE (2010) Peripheral inhibition of glutaminase reduces carrageenan-induced Fos expression in the superficial dorsal horn of the rat. Neuroscience Letters 472(3):157-60. PMID: 2013286. Available at http://www.ncbi.nlm.nih.gov/pubmed/20132864
Horvath P, Wild T, Kutay U, Csucs G (2011) Machine Learning Improves the Precision and Robustness of High-Content Screens: Using Nonlinear Multiparametric Methods to Analyze Screening Results. Journal of Biomolecular Screening 2011: epub ahead of print. PMID: 21807964. Available at http://www.ncbi.nlm.nih.gov/pubmed/21807964
Hou Y-N, Lavaf A, Huang D, Peters S, Huq R, Friedrich V, Rosenstein BS, Kao J (2009) Development of an Automated gamma-H2AX Immunocytochemistry Assay. Radiation Research 171(3):360-7. PMID: 19267563. Available at http://www.ncbi.nlm.nih.gov/pubmed/19267563
Huang H-S, Allen JA, Mabb AM, King IF, Miriyala J, Taylor-Blake B, Sciaky N, Dutton JW, Lee H-M, Chen X, Jin J, Bridges AS, Zylka MJ, Roth BL, Philpot BD (2012) Topoisomerase inhibitors unsilence the dormant allele of Ube3a in neurons. Nature 481(7380):185-189. PMID: 22190039. Available at http://www.ncbi.nlm.nih.gov/pubmed/22190039
Hughey JJ, Lee TK, Covert MW (2009) Computational modeling of mammalian signaling networks. Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2(2):194-209. PMID: none. Available at http://www.ncbi.nlm.nih.gov/pubmed/20836022
Hung Yin P, Albeck John G, Tantama M, Yellen G (2011) Imaging Cytosolic NADH-NAD+ Redox State with a Genetically Encoded Fluorescent Biosensor. Cell Metabolism 14(4):545-554. PMID: 21982714. Available at http://www.ncbi.nlm.nih.gov/pubmed/21982714
Huth J, Buchholz M, Kraus JM, Mølhave K, Gradinaru C, Wichert Gv, Gress TM, Neumann H, Kestler HA (2011) TimeLapseAnalyzer: Multi-target analysis for live-cell imaging and time-lapse microscopy. Computer Methods and Programs in Biomedicine 104(2):227-234. PMID: 21705106. Available at http://www.ncbi.nlm.nih.gov/pubmed/21705106
Huttenhower C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG (2009) Exploring the human genome with functional maps. Genome Research 19(6):1093-106. PMID: 19246570. Available at http://www.ncbi.nlm.nih.gov/pubmed/19246570
Ilg K, Endt K, Misselwitz B, Stecher B, Aebi M, Hardt WD (2009) O-antigen-negative salmonella enterica serovar typhimurium is attenuated in intestinal colonization but elicits colitis in streptomycin-Treated Mice. Infection and Immunity 77(6):2568-75. PMID: 19528213. Available at http://www.ncbi.nlm.nih.gov/pubmed/19246570
Irazoqui JE, Ausubel FM (2010) 99th Dahlem Conference on Infection, Inflammation and Chronic Inflammatory Disorders: Caenorhabditis elegans as a model to study tissues involved in host immunity and microbial pathogenesis. Clinical & Experimental Immunology 160(1):48-57. PMID: 20415851. Available at http://www.ncbi.nlm.nih.gov/pubmed/20415851
Iskratsch T, Lange S, Dwyer J, Kho AL, Remedios Cd, Ehler E (2010) Formin follows function: a muscle-specific isoform of FHOD3 is regulated by CK2 phosphorylation and promotes myofibril maintenance. Journal of Cell Biology 191(6):1159-72. PMID: 21149568. Available at http://www.ncbi.nlm.nih.gov/pubmed/21149568
Isse K, Lesniak A, Grama K, Roysam B, Minervini MI, Demetris AJ (2012) Digital Transplantation Pathology: Combining Whole Slide Imaging, Multiplex Staining and Automated Image Analysis. American Journal of Transplantation 12(1):27-37. PMID: 22053785. Available at http://www.ncbi.nlm.nih.gov/pubmed/22053785
Ivanovska T, Schenk A, Homeyer A, Deng M, Dahmen U, Dirsch O, Hahn H, Linsen L (2010) A fast and robust hepatocyte quantification algorithm including vein processing. BMC Bioinformatics 11(1):124. PMID: 20219107. Available at http://www.ncbi.nlm.nih.gov/pubmed/20219107
Jackson D, Lenard M, Zelensky A, Shaikh M, Scharpf JV, Shaginaw R, Nawade M, Agler M, Cloutier NJ, Fennell M, Guo Q, Wardwell-Swanson J, Zhao D, Zhu Y, Miller C, Gill J (2010) HCS Road. Journal of Biomolecular Screening 15(7):882-91. PMID: 20639503. Available at http://www.ncbi.nlm.nih.gov/pubmed/20639503
Jain V, Seung HS, Turaga SC (2010) Machines that learn to segment images: a crucial technology for connectomics. Current Opinion in Neurobiology 20(5):653-66. PMID: 20801638. Available at http://www.ncbi.nlm.nih.gov/pubmed/20801638
Jonak C, Skvara H, Kunstfeld R, Trautinger F, Schmid JA (2011) Intradermal Indocyanine Green for <italic>In Vivo</italic> Fluorescence Laser Scanning Microscopy of Human Skin: A Pilot Study. PLoS ONE 6(8):e23972. PMID: 21904601. Available at http://www.ncbi.nlm.nih.gov/pubmed/21904601
Jones TR, Carpenter AE (2007) Flexible image analysis. Biophotonics International 14(7):31-2. PMID: none. Available at http://www.photonics.com/Article.aspx?AID=38554
Jones TR, Carpenter AE, Golland P (2005) Voronoi-based segmentation of cells on image manifolds. Proceedings of the ICCV Workshop on Computer Vision for Biomedical Image Applications (CVBIA):535-43. PMID: none. Available at http://people.csail.mit.edu/thouis/JonesCVBIA2005.pdf
Jones TR, Carpenter AE, Lamprecht MR, Moffat J, Silver SJ, Grenier JK, Castoreno AB, Eggert US, Root DE, Golland P, Sabatini DM (2009) Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning. PNAS 106(6):1826-31. PMID: 19188593. Available at http://www.ncbi.nlm.nih.gov/pubmed/19188593
Jones TR, Carpenter AE, Sabatini DM, Golland P (2006) Methods for high-content, high-throughput image-based cell screening. Proceedings of the Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB):65-72. PMID: none. Available at http://people.csail.mit.edu/thouis/JonesEtAlMIAAB.pdf
Jones TR, Kang IH, Wheeler DB, Lindquist RA, Papallo A, Sabatini DM, Golland P, Carpenter AE (2008) CellProfiler Analyst: data exploration and analysis software for complex image-based screens. BMC Bioinformatics 9(1):482. PMID: 19014601. Available at http://www.ncbi.nlm.nih.gov/pubmed/19188593
Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M (2010) CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses. RNA 16(7):1301-7. PMID: 20494971. Available at http://www.ncbi.nlm.nih.gov/pubmed/20494971
Jung C, Kim C (2010) Segmenting clustered nuclei using H-minima transform-based marker extraction and contour parameterization. IEEE Transactions in Biomedical Engineering 57(10):2600-4. PMID: 20656653. Available at http://www.ncbi.nlm.nih.gov/pubmed/20656653
Jung S, Silvius D, Nolan KA, Borchert GL, Millet YH, Phang JM, Gunn TM (2011) Developmental cardiac hypertrophy in a mouse model of prolidase deficiency. Birth Defects Research Part A: Clinical and Molecular Teratology 91(4):204-217. PMID: 21472842. Available at http://www.ncbi.nlm.nih.gov/pubmed/21472842
Jurmeister S, Baumann M, Balwierz A, Keklikoglou I, Ward A, Uhlmann S, Zhang JD, Wiemann S, Sahin Ö (2012) MicroRNA-200c Represses Migration and Invasion of Breast Cancer Cells by Targeting Actin-Regulatory Proteins FHOD1 and PPM1F. Molecular and Cellular Biology 32(3):633-651. PMID: 22144583. Available at http://www.ncbi.nlm.nih.gov/pubmed/22144583
Kadandale P, Stender JD, Glass CK, Kiger AA (2010) Conserved role for autophagy in Rho1-mediated cortical remodeling and blood cell recruitment. PNAS 107(23):10502-7. PMID: 20498061. Available at http://www.ncbi.nlm.nih.gov/pubmed/20498061
Kaipparettu BA, Kuiatse I, Chan BTY, Kaipparettu MB, Lee AV, Oesterreich S (2008) Novel egg white-based 3-D cell culture system. Biotechniques 45(2):165-+. PMID: 18687065. Available at http://www.ncbi.nlm.nih.gov/pubmed/18687065
Kakizawa S, Yamazawa T, Chen Y, Ito A, Murayama T, Oyamada H, Kurebayashi N, Sato O, Watanabe M, Mori N, Oguchi K, Sakurai T, Takeshima H, Saito N, Iino M (2012) Nitric oxide-induced calcium release via ryanodine receptors regulates neuronal function. The EMBO Journal 31(2):417-428. PMID: 22036948. Available at http://www.ncbi.nlm.nih.gov/pubmed/22036948
Kalaany NY, Sabatini DM (2009) Tumours with PI3K activation are resistant to dietary restriction. Nature 458(7239):725-31. PMID: 19279572. Available at http://www.ncbi.nlm.nih.gov/pubmed/19279572
Kamentsky L, Jones TR, Fraser A, Bray M-A, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE (2011) Improved structure, function, and compatibility for CellProfiler: modular high-throughput image analysis software. Bioinformatics. PMID: 21349861. Available at http://www.ncbi.nlm.nih.gov/pubmed/21349861
Karacali B, Vamvakidou AP, Tozeren A (2007) Automated recognition of cell phenotypes in histology images based on membrane- and nuclei-targeting biomarkers. BMC Medical Imaging 7:7. PMID: 17822559. Available at http://www.ncbi.nlm.nih.gov/pubmed/19279572
Karimi N, Samavi S, Shirani S, Amraee S, Safaryazdi Z, Mahmoodzadeh E (2009) A Region-Based Predictor for Lossless Compression of RNAi Images. Canadian Conference on Electrical and Computer Engineering:987-90. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?reload=true&arnumber=5090277
Kasper CA, Sorg I, Schmutz C, Tschon T, Wischnewski H, Kim ML, Arrieumerlou C (2010) Cell-Cell Propagation of NF-[kappa]B Transcription Factor and MAP Kinase Activation Amplifies Innate Immunity against Bacterial Infection. Immunity 33(5):804-16. PMID: 21093316. Available at http://www.ncbi.nlm.nih.gov/pubmed/21093316
Keane TJ, Londono R, Turner NJ, Badylak SF (2012) Consequences of ineffective decellularization of biologic scaffolds on the host response. Biomaterials 33(6):1771-1781. PMID: 22137126. Available at http://www.ncbi.nlm.nih.gov/pubmed/22137126
Keith WN, Bilsland AE (2008) Targeting Telomerase: Therapeutic Options for Cancer Treatment. Telomeres and Telomerase in Ageing, Disease, and Cancer:247-83. PMID: none. Available at http://dx.doi.org/10.1007/978-3-540-73709-4_13
Kelly M, Blanchard SD, Kersten E, Koy K (2011) Terrestrial Remotely Sensed Imagery in Support of Public Health: New Avenues of Research Using Object-Based Image Analysis. Remote Sensing 3(11):2321-2345. PMID: none. Available at http://www.mdpi.com/2072-4292/3/11/2321/
Keogh RJ (2010) New technology for investigating trophoblast function. Placenta 31(4):347-50. PMID: 20207415. Available at http://www.ncbi.nlm.nih.gov/pubmed/20207415
Kerr MC, Wang JTH, Castro NA, Hamilton NA, Town L, Brown DL, Meunier FA, Brown NF, Stow JL, Teasdale RD (2010) Inhibition of the PtdIns(5) kinase PIKfyve disrupts intracellular replication of Salmonella. EMBO Journal 29(8):1331-47. PMID: 20300065. Available at http://www.ncbi.nlm.nih.gov/pubmed/20300065
Khan IA, Lupi M, Campbell L, Chappell SC, Brown MR, Wiltshire M, Smith PJ, Ubezio P, Errington RJ (2011) Interoperability of time series cytometric data: A cross platform approach for modeling tumor heterogeneity. Cytometry Part A 79A(3):214-26. PMID: 21337698. Available at http://www.ncbi.nlm.nih.gov/pubmed/21337698
Kherlopian AR, Song T, Duan Q, Neimark MA, Po MJ, Gohagan JK, Laine AF (2008) A review of imaging techniques for systems biology. BMC Systems Biology 2:74. PMID: 18700030. Available at http://www.ncbi.nlm.nih.gov/pubmed/18700030
Kim D, Yong-su C, Soo Jung K (2008) High Content Cellular Analysis for Functional Screening of Novel Cell Cycle Related Genes. IEEE Conference on BioMedical Engineering & Informatics (BMEI) 2008 1:148-52. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4548653
Kim JS, Hur D, Hwang JK, Chung C, Chang JK (2010) Ongoing development of image cytometers. Bioanalysis 2(10):1755-65. PMID: 21083327. Available at http://www.ncbi.nlm.nih.gov/pubmed/21083327
Kim K, Rowat AC, Carpenter AE (2010) Automated tracking of yeast cell lineages. Proc SPIE 7798(23). PMID: none. Available at http://adsabs.harvard.edu/abs/2010SPIE.7798E..60K
King ONF, Li XS, Sakurai M, Kawamura A, Rose NR, Ng SS, Quinn AM, Rai G, Mott BT, Beswick P, Klose RJ, Oppermann U, Jadhav A, Heightman TD, Maloney DJ, Schofield CJ, Simeonov A (2010) Quantitative High-Throughput Screening Identifies 8-Hydroxyquinolines as Cell-Active Histone Demethylase Inhibitors. PLoS ONE 5(11):e15535. PMID: 21124847. Available at http://www.ncbi.nlm.nih.gov/pubmed/21124847
Ko K-C, Tai PC, Derby CD (2012) Mechanisms of Action of Escapin, a Bactericidal Agent in the Ink Secretion of the Sea Hare Aplysia californica: Rapid and Long-Lasting DNA Condensation and Involvement of the OxyR-Regulated Oxidative Stress Pathway. Antimicrobial Agents and Chemotherapy 56(4):1725-1734. PMID: 22232273. Available at http://www.ncbi.nlm.nih.gov/pubmed/22232273
Kong J, Cooper L, Kurc T, Brat D, Saltz J (2011) Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma in Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE:6605-6608. PMID: 22255853. Available at http://www.ncbi.nlm.nih.gov/pubmed/22255853
Kozak K, Bakos G, Hoff A, Bennett E, Dunican D, Davies A, Kelleher D, Long A, Csucs G (2010) Workflow-Based Software Environment for Large-Scale Biological Experiments. Journal of Biomolecular Screening 15(7):892-9. PMID: 20625182. Available at http://www.ncbi.nlm.nih.gov/pubmed/20625182
Krastev DB, Slabicki M, Paszkowski-Rogacz M, Hubner NC, Junqueira M, Shevchenko A, Mann M, Neugebauer KM, Buchholz F (2011) A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly. Nature Cell Biology 13(7):809-18. PMID: 21642980. Available at http://www.ncbi.nlm.nih.gov/pubmed/21642980
Krausz E (2007) High-content siRNA screening. Molecular BioSystems 3(4):232-40. PMID: 17372651. Available at http://www.ncbi.nlm.nih.gov/pubmed/17372651
Kriston-Vizi J, Thong N, Poh C, Yee K, Ling J, Kraut R, Wasser M (2011) Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms. BMC Bioinformatics 12(1):232. PMID: 21668958. Available at http://www.ncbi.nlm.nih.gov/pubmed/21668958
Krogan NJ, Hughes TR (2006) Signals and systems. Genome Biology 7(4):3. PMID: 16677414. Available at http://www.ncbi.nlm.nih.gov/pubmed/16677414
Kuijl C, Savage ND, Marsman M, Tuin AW, Janssen L, Egan DA, Ketema M, van den Nieuwendijk R, van den Eeden SJ, Geluk A, Poot A, van der Marel G, Beijersbergen RL, Overkleeft H, Ottenhoff TH, Neefjes J (2007) Intracellular bacterial growth is controlled by a kinase network around PKB/AKT1. Nature 450(7170):725-30. PMID: 18046412. Available at http://www.ncbi.nlm.nih.gov/pubmed/18046412
Kumerz M, Heiss EH, Schachner D, Atanasov AG, Dirsch VM (2011) Resveratrol inhibits migration and Rac1 activation in EGF- but not PDGF-activated vascular smooth muscle cells. Molecular Nutrition & Food Research 55(8):1230-1236. PMID: 21732534. Available at http://www.ncbi.nlm.nih.gov/pubmed/21732534
Kvilekval K, Fedorov D, Obara B, Singh A, Manjunath BS (2010) Bisque: a platform for bioimage analysis and management. Bioinformatics 26(4):544-52. PMID: 20031971. Available at http://www.ncbi.nlm.nih.gov/pubmed/20031971
Labi V, Erlacher M, Krumschnabel G, Manzl C, Tzankov A, Pinon J, Egle A, Villunger A (2010) Apoptosis of leukocytes triggered by acute DNA damage promotes lymphoma formation. Genes & Development 24(15):1602-7. PMID: 20679395. Available at http://www.ncbi.nlm.nih.gov/pubmed/20679395
Lagunas A, Comelles J, Martinez E, Samitier J (2010) Universal Chemical Gradient Platforms Using Poly(methyl methacrylate) Based on the Biotin-Streptavidin Interaction for Biological Applications. Langmuir 26(17):14154-61. PMID: 20712344. Available at http://www.ncbi.nlm.nih.gov/pubmed/20712344
Lai FPL, Szczodrak M, Oelkers JM, Ladwein M, Acconcia F, Benesch S, Auinger S, Faix J, Small JV, Polo S, Stradal TEB, Rottner K (2009) Cortactin Promotes Migration and Platelet-derived Growth Factor-induced Actin Reorganization by Signaling to Rho-GTPases. Molecular Biology of the Cell 20(14):3209-23. PMID: 19458196. Available at http://www.ncbi.nlm.nih.gov/pubmed/19458196
Lamprecht MR, Sabatini DM, Carpenter AE (2007) CellProfiler: free, versatile software for automated biological image analysis. Biotechniques 42(1):71-5. PMID: 17269487. Available at http://www.ncbi.nlm.nih.gov/pubmed/17269487
Lapan P, Zhang J, Hill A, Zhang Y, Martinez R, Haney S (2009) Image-Based Assessment of Growth and Signaling Changes in Cancer Cells Mediated by Direct Cell-Cell Contact. PLoS ONE 4(8):e6822. PMID: 19774227. Available at http://www.ncbi.nlm.nih.gov/pubmed/19774227
Lapan P, Zhang J, Pan J, Hill A, Haney S (2008) Single cell cytometry of protein function in RNAi treated cells and in native populations. BMC Cell Biology 9:43. PMID: 18673568. Available at http://www.ncbi.nlm.nih.gov/pubmed/18673568
LaPlante JM, Falardeau JL, Brown EM, Slaugenhaupt SA, Vassilev PM (2011) The cation channel mucolipin-1 is a bifunctional protein that facilitates membrane remodeling via its serine lipase domain. Experimental Cell Research 317(6):691-705. PMID: 21256127. Available at http://www.ncbi.nlm.nih.gov/pubmed/21256127
Laughney A, Krishnaswamy V, Schwab M, Wells WA, Paulsen KD, Pogue BW (2009) Biophysical interpretation and ex-vivo characterization of scattered light from tumor-associated breast stroma. Optical Tomography and Spectroscopy of Tissue VIII 7174:71741Y-9. PMID: none. Available at http://adsabs.harvard.edu/abs/2009SPIE.7174E..47L
Lavaf A, Fu S, Peters S, Hou Y-N, Rosenstein BS, Kao J (2009) ATM Phosphorylation Kinetics as a Biological Reporter of Cellular Radiosensitivity. Journal of Cancer Molecules 5(1):9-14. PMID: none. Available at http://mupnet.com/JOCM%205(1)%209.htm
Lawless C, Wilkinson D, Young A, Addinall S, Lydall D (2010) Colonyzer: automated quantification of micro-organism growth characteristics on solid agar. BMC Bioinformatics 11(1):287. PMID: 20509870. Available at http://www.ncbi.nlm.nih.gov/pubmed/20509870
Lawson C, Lim S-T, Uryu S, Chen XL, Calderwood DA, Schlaepfer DD (2012) FAK promotes recruitment of talin to nascent adhesions to control cell motility. The Journal of Cell Biology 196(2):223-232. PMID: 22270917. Available at http://www.ncbi.nlm.nih.gov/pubmed/22270917
Leavesley SJ, Annamdevula N, Boni J, Stocker S, Grant K, Troyanovsky B, Rich TC, Alvarez DF (2012) Hyperspectral imaging microscopy for identification and quantitative analysis of fluorescently-labeled cells in highly autofluorescent tissue. Journal of Biophotonics 5(1):67-84. PMID: 21987373. Available at http://www.ncbi.nlm.nih.gov/pubmed/21987373
Lecomte N, Njardarson JT, Nagorny P, Yang G, Downey R, Ouerfelli O, Moore MAS, Danishefsky SJ (2011) Emergence of potent inhibitors of metastasis in lung cancer via syntheses based on migrastatin. Proceedings of the National Academy of Sciences 2011: epub ahead of print. PMID: 21808037. Available at http://www.pnas.org/content/early/2011/07/25/1015247108.long
Lee EL, von Recum HA (2010) Cell culture platform with mechanical conditioning and nondamaging cellular detachment. Journal of Biomedical Materials Research Part A 93A(2):411-8. PMID: 20358641. Available at http://www.ncbi.nlm.nih.gov/pubmed/20358641
Lefevre F, Robe P, Jarrin C, Ginolhac A, Zago C, Auriol D, Vogel TM, Simonet P, Nalin R (2008) Drugs from hidden bugs: their discovery via untapped resources. Research in Microbiology 159(3):153-61. PMID: 18375103. Available at http://www.ncbi.nlm.nih.gov/pubmed/18375103
Lehmussola A, Ruusuvuori P, Selinummi J, Huttunen H, Yli-Harja O (2007) Computational framework for simulating fluorescence microscope images with cell populations. IEEE Transactions on Medical Imaging 26(7):1010-6. PMID: 17649914. Available at http://www.ncbi.nlm.nih.gov/pubmed/17649914
Li F, Zhou X, Ma J, Wong ST (2007) An automated feedback system with the hybrid model of scoring and classification for solving over-segmentation problems in RNAi high content screening. Journal of Microscopy 226(Pt 2):121-32. PMID: 17444941. Available at http://www.ncbi.nlm.nih.gov/pubmed/17649914
Li F, Zhou X, Zhu J, Ma J, Huang X, Wong S (2007) High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles. BMC Biotechnology 7(1):66. PMID: 17925027. Available at http://www.ncbi.nlm.nih.gov/pubmed/17925027
Li F, Zhang X, Jin Y-P, Mulder A, Reed EF (2011) Antibody ligation of human leukocyte antigen class I molecules stimulates migration and proliferation of smooth muscle cells in a focal adhesion kinase–dependent manner. Human Immunology 72(12):1150-1159. PMID: 22001078. Available at http://www.ncbi.nlm.nih.gov/pubmed/22001078
Li S, Buehnemann C, Hassan B, Noble JA. (2010) Segmentation of cell clumps for quantitative analysis. Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE: 4813-6. PMID: 21097296. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5628032
Lian S, Fritzler MJ, Katz J, Hamazaki T, Terada N, Satoh M, Chan EKL (2007) Small interfering RNA-mediated silencing induces target-dependent assembly of GW/P bodies. Molecular Biology of the Cell 18(9):3375-87. PMID: 17596515. Available at http://www.ncbi.nlm.nih.gov/pubmed/17596515
Liberali P, Ramo P, Pelkmans L (2008) Protein kinases: starting a molecular systems view of endocytosis. Annual Review of Cell and Developmental Biology 24:501-23. PMID: 18598215. Available at hhttp://www.ncbi.nlm.nih.gov/pubmed/18598215
Licciulli S, Luise C, Zanardi A, Giorgetti L, Viale G, Lanfrancone L, Carbone R, Alcalay M (2010) Pirin delocalization in melanoma progression identified by high content immuno-detection based approaches. BMC Cell Biology 11(1):5. PMID: 20089166. Available at http://www.ncbi.nlm.nih.gov/pubmed/20089166
Lim EJ, Ober TJ, Edd JF, McKinley GH, Toner M (2012) Visualization of microscale particle focusing in diluted and whole blood using particle trajectory analysis. Lab on a Chip, epub ahead of print. PMID: 2238237. Available at http://www.ncbi.nlm.nih.gov/pubmed/22382737
Lin Y-S, Lin C-C, Tsai Y-S, Ku T-C, Huang Y-H, Hsu C-N (2010) A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images. Bioinformatics 26(12):i29-i37. PMID: 20529919. Available at http://www.ncbi.nlm.nih.gov/pubmed/20529919
Lindquist RA, Ottina KA, Wheeler DB, Hsu PP, Thoreen CC, Guertin DA, Ali SM, Sengupta S, Shaul YD, Lamprecht MR, Madden KL, Papallo AR, Jones TR, Sabatini DM, Carpenter AE (2011) Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1–S6K pathway signaling. Genome Research 21(3):433-446. PMID: 21239477. Available at http://www.ncbi.nlm.nih.gov/pubmed/21239477
Lipinski MM, Zheng B, Lu T, Yan Z, Py BF, Ng A, Xavier RJ, Li C, Yankner BA, Scherzer CR, Yuan J (2010) Genome-wide analysis reveals mechanisms modulating autophagy in normal brain aging and in Alzheimer's disease. PNAS 107(32):14164-9. PMID: 20660724. Available at http://www.ncbi.nlm.nih.gov/pubmed/20660724
Liu D (2007) Seeing cells on the web. CBE Life Sciences Education 6(1):21-4. PMID: 17339390. Available at http://www.ncbi.nlm.nih.gov/pubmed/17339390
Ljosa V, Carpenter AE (2008) High-throughput screens for fluorescent dye discovery. Trends in Biotechnology 26(10):527-30. PMID: 18706725. Available at http://www.ncbi.nlm.nih.gov/pubmed/18706725
Loewer A, Batchelor E, Gaglia G, Lahav G (2010) Basal Dynamics of p53 Reveal Transcriptionally Attenuated Pulses in Cycling Cells. Cell 142(1):89-100. PMID: 20598361 Available at http://www.ncbi.nlm.nih.gov/pubmed/20598361
Logan DJ, Carpenter AE (2010) Screening cellular feature measurements for image-based assay development. Journal of Biomolecular Screening 15(7):840-6. PMID: 20516293. Available at http://www.ncbi.nlm.nih.gov/pubmed/20516293
Lorenzo-Ginori JV (2011) A method to determine the size of the structuring element in morphological correction of non-uniform illumination in Image Processing (ICIP), 2011 18th IEEE International Conference on:1453-1456. PMID: none. Available at http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6115715&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6115715
Loyek C, Rajpoot N, Khan M, Nattkemper T (2011) BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics 12(1):297. PMID: 21777450. Available at http://www.ncbi.nlm.nih.gov/pubmed/21777450
Lu Y, Lu J, Liu T, Yang J (2011) Automated gene oscillation phase classification for zebrafish presomitic mesoderm cells. Cytometry Part A 79A(9):727-735. PMID: 21710640. Available at http://www.ncbi.nlm.nih.gov/pubmed/21710640
Lucas JT, Jr., Salimath BP, Slomiany MG, Rosenzweig SA (2010) Regulation of invasive behavior by vascular endothelial growth factor is HEF1-dependent. Oncogene 29(31):4449-59. PMID: 20498643. Available at http://www.ncbi.nlm.nih.gov/pubmed/20498643
Mace DL, Varnado N, Zhang W, Frise E, Ohler U (2010) Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images. Bioinformatics 26(6):761-9. PMID: 19942587 Available at http://www.ncbi.nlm.nih.gov/pubmed/19942587
Mah L-J, Orlowski C, Ververis K, Vasireddy R, El-Osta A, Karagiannis T (2011) Evaluation of the efficacy of radiation-modifying compounds using gammaH2AX as a molecular marker of DNA double-strand breaks. Genome Integrity 2(1):3. PMID: 21261999. Available at http://www.ncbi.nlm.nih.gov/pubmed/21261999
Majeau N, Fromentin R, Savard C, Duval M, Tremblay MJ, Leclerc D (2009) Palmitoylation of hepatitis C virus core protein is important for virion production. Journal of Biological Chemistry284(49):33915-25. PMID: 19783655. Available at http://www.ncbi.nlm.nih.gov/pubmed/19783655
Malik SA, Orhon I, Morselli E, Criollo A, Shen S, Marino G, BenYounes A, Benit P, Rustin P, Maiuri MC, Kroemer G (2011) BH3 mimetics activate multiple pro-autophagic pathways. Oncogene 30(37):3918-3929. PMID: 21508685. Available at http://www.ncbi.nlm.nih.gov/pubmed/21508685
Manikwar P, Tejo BA, Shinogle H, Moore DS, Zimmerman T, Blanco F, Siahaan TJ (2011) Utilization of I-domain of LFA-I to target drug and marker molecules to leukocytes. Theranostics 2011(1):277-89. PMID: 21611107. Available at http://www.thno.org/v01p0277.htm
Mano S, Miwa T, Nishikawa S, Mimura T, Nishimura M (2009) Seeing Is Believing: On the Use of Image Databases for Visually Exploring Plant Organelle Dynamics. Plant and Cell Physiology 50(12):2000-14. PMID: PMID: 19755394. Available at http://www.ncbi.nlm.nih.gov/pubmed/19755394
Manzano M, Lozano D, Arcos D, Portal-Nunez S, Orden CLl, Esbrit P, Vallet-Regi M (2011) Comparison of the osteoblastic activity conferred on Si-doped hydroxyapatite scaffolds by different osteostatin coatings. Acta Biomaterialia 7(10):3555-62. PMID: 21693201. Available at http://www.ncbi.nlm.nih.gov/pubmed/21693201
Markowetz F (2010) How to Understand the Cell by Breaking It: Network Analysis of Gene Perturbation Screens. PLoS Computational Biology 6(2):e1000655. PMID: 20195495. Available at http://www.ncbi.nlm.nih.gov/pubmed/20195495
Marsal R, Sanchez M, Lluch A, Moratal D (2011) Morphological and statistical analysis of biomaterials with applications in tissue engineering by means of microscopy image processing. Latin America Transactions, IEEE (Revista IEEE America Latina) 9(3):399-407. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5893789
Martin DT, Sandoval S, Ta CN, Ruidiaz ME, Cortes-Mateos MJ, Messmer D, Kummel AC, Blair SL, Wang-Rodriguez J (2011) Quantitative Automated Image Analysis System with Automated Debris Filtering for the Detection of Breast Carcinoma Cells. Acta Cytologica 55(3):271-80. PMID: 21525740. Available at http://www.ncbi.nlm.nih.gov/pubmed/21525740
Martins C, Doran C, Laires A, Rueff J, Rodrigues AS (2011) Genotoxic and apoptotic activities of the food flavourings myristicin and eugenol in AA8 and XRCC1 deficient EM9 cells. Food and Chemical Toxicology 49(2):385-92. PMID: 21087650. Available at http://www.ncbi.nlm.nih.gov/pubmed/21087650
Mashburn DN, Lynch HE, Ma X, Hutson MS (2012) Enabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissues. Cytometry Part A n/a-n/a. PMID: 22411907. Available at http://www.ncbi.nlm.nih.gov/pubmed/22411907
Matula P, Kumar A, Worz I, Erfle H, Bartenschlager R, Eils R, Rohr K (2009) Single-Cell-Based Image Analysis of High-Throughput Cell Array Screens for Quantification of Viral Infection. Cytometry Part A 75A(4):309-18. PMID: 19006066. Available at http://www.ncbi.nlm.nih.gov/pubmed/19006066
Mauricio CRM, Schneider FK, Correia dos Santos L (2010) Image-based red cell counting for wild animals blood. Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE:438-41. PMID: 21096766. Available at http://www.ncbi.nlm.nih.gov/pubmed/21096766
Mayer K, Iolyeva ME, Meyer-Grahle U, Brix K (2008) Intestine-specific expression of green fluorescent protein-tagged cathepsin B: proof-of-principle experiments. Biological Chemistry 389(8):1085-96. PMID: 18979632. Available at http://www.ncbi.nlm.nih.gov/pubmed/19006066
Mayhew MB, Robinson JW, Jung B, Haase SB, Hartemink AJ (2011) A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments. Bioinformatics 27(13):i295-i303. PMID: 21685084. Available at http://www.ncbi.nlm.nih.gov/pubmed/21685084
McDonough PM, Agustin RM, Ingermanson RS, Loy PA, Buehrer BM, Nicoll JB, Prigozhina NL, Mikic I, Price JH (2009) Quantification of Lipid Droplets and Associated Proteins in Cellular Models of Obesity via High-Content/High-Throughput Microscopy and Automated Image Analysis. Assay and Drug Development Technologies 7(5):440-60. PMID: 19895345. Available at http://www.ncbi.nlm.nih.gov/pubmed/19895345
Megason SG, Fraser SE (2007) Imaging in systems biology. Cell 130(5):784-95. PMID: 17803903. Available at http://www.ncbi.nlm.nih.gov/pubmed/17803903
Meijering E, van Cappellen G (2007) Quantitative Biological Image Analysis. Imaging Cellular and Molecular Biological Function:45-70. PMID: none. Available at http://www.springerlink.com/content/mt565065k032581w/fulltext.pdf
Meirelles LD, Sand TT, Harman RJ, Lennon DP, Caplan AI (2009) MSC Frequency Correlates with Blood Vessel Density in Equine Adipose Tissue. Tissue Engineering Part A 15(2):221-9. PMID: 18847356. Available at http://www.ncbi.nlm.nih.gov/pubmed/18847356
Meissburger B, Stachorski L, Röder E, Rudofsky G, Wolfrum C (2011) Tissue inhibitor of matrix metalloproteinase 1 (TIMP1) controls adipogenesis in obesity in mice and in humans. Diabetologia 54(6):1468-1479. PMID: 21437772. Available at http://www.ncbi.nlm.nih.gov/pubmed/21437772
Meissburger B, Ukropec J, Roeder E, Beaton N, Geiger M, Teupser D, Civan B, Langhans W, Nawroth PP, Gasperikova D, Rudofsky G, Wolfrum C (2011) Adipogenesis and insulin sensitivity in obesity are regulated by retinoid-related orphan receptor gamma. EMBO Molecular Medicine 3(11): 637-651. PMID: 21853531. Available at http://www.ncbi.nlm.nih.gov/pubmed/21853531
Melichar HJ, Li O, Herzmark P, Padmanabhan RK, Oliaro J, Ludford-Menting MJ, Bousso P, Russell SM, Roysam B, Robey EA (2011) Quantifying subcellular distribution of fluorescent fusion proteins in cells migrating within tissues. Immunology & Cell Biology 89(4):549-57. PMID: 20956985. Available at http://www.ncbi.nlm.nih.gov/pubmed/20956985
Memarian N, Jessulat M, Alirezaie J, Mir-Rashed N, Xu J, Zareie M, Smith M, Golshani A (2007) Colony size measurement of the yeast gene deletion strains for functional genomics. BMC Bioinformatics 8:117. PMID: 17408490. Available at http://www.ncbi.nlm.nih.gov/pubmed/17408490
Meruvia-Pastor OE, Soh J, Schmidt EJ, Boughner JC, Xiao M, Jamniczky HA, Hallgrimsson B, Sensen CW (2011) Estimating Cell Count and Distribution in Labeled Histological Samples Using Incremental Cell Search. International Journal of Biomedical Imaging 2011. PMID: 21747822. Available at http://www.ncbi.nlm.nih.gov/pubmed/21747822
Metzig M, Nickles D, Falschlehner C, Lehmann-Koch J, Straub BK, Roth W, Boutros M (2011) An RNAi screen identifies USP2 as a factor required for TNF-α-induced NF-κB signaling. International Journal of Cancer 129(3):607-18. PMID: 21480224. Available at http://www.ncbi.nlm.nih.gov/pubmed/21480224
Michnick SW, Ear PH, Landry C, Malleshaiah MK, Messier V, Jonathan W, Christine G, Gerald RF. (2010) A Toolkit of Protein-Fragment Complementation Assays for Studying and Dissecting Large-Scale and Dynamic Protein-Protein Interactions in Living Cells. Methods in Enzymology Volume 470:335-68. PMID: 20946817. Available at http://www.ncbi.nlm.nih.gov/pubmed/20946817
Miklius M, Hilgenfeldt S (2011) Epithelial tissue statistics: Eliminating bias reveals morphological and morphogenetic features. The European Physical Journal E: Soft Matter and Biological Physics 34(5):1-13. PMID: 21607834. Available at http://www.ncbi.nlm.nih.gov/pubmed/21607834
Millard BL, Niepel M, Menden MP, Muhlich JL, Sorger PK (2011) Adaptive informatics for multifactorial and high-content biological data. Nature Methods 8(6):487-92. PMID: 21516115. Available at http://www.ncbi.nlm.nih.gov/pubmed/21516115
Milona A, Owen BM, van Mil S, Dormann D, Mataki C, Boudjelal M, Cairns W, Schoonjans K, Milligan S, Parker M, White R, Williamson C (2010) The normal mechanisms of pregnancy-induced liver growth are not maintained in mice lacking the bile acid sensor Fxr. American Journal of Physiology Gastrointestinal and Liver Physiology 298(2):G151-8. PMID: 19815629. Available at http://www.ncbi.nlm.nih.gov/pubmed/19815629
Minsaas L, Planaguma J, Madziva M, Krakstad BF, Masia-Balague M, Katz AA, Aragay AM (2010) Filamin A Binds to CCR2B and Regulates Its Internalization. PLoS ONE 5(8):e12212. PMID: 20808917. Available at http://www.ncbi.nlm.nih.gov/pubmed/20808917
Misselwitz B, Dilling S, Vonaesch P, Sacher R, Snijder B, Schlumberger M, Rout S, Stark M, Mering Cv, Pelkmans L, Hardt W-D (2011) RNAi screen of Salmonella invasion shows role of COPI in membrane targeting of cholesterol and Cdc42. Molecular Systems Biology 7. PMID: 21407211. Available at http://dx.doi.org/10.1038/msb.2011.7
Misselwitz B, Kreibich SK, Rout S, Stecher B, Periaswamy B, Hardt W-D (2011) Salmonella enterica Serovar Typhimurium Binds to HeLa Cells via Fim-Mediated Reversible Adhesion and Irreversible Type Three Secretion System 1-Mediated Docking. Infection and Immunity 79(1):330-41. PMID: 20974826. Available at http://www.ncbi.nlm.nih.gov/pubmed/20974826
Misselwitz B, Strittmatter G, Periaswamy B, Schlumberger M, Rout S, Horvath P, Kozak K, Hardt W-D (2010) Enhanced CellClassifier: a multi-class classification tool for microscopy images. BMC Bioinformatics 11(1):30. PMID: 20074370. Available at http://www.ncbi.nlm.nih.gov/pubmed/20074370
Misztal K, Wisniewska MB, Ambrozkiewicz M, Nagalski A, Kuznicki J (2011) WNT Protein-independent Constitutive Nuclear Localization of {beta}-Catenin Protein and Its Low Degradation Rate in Thalamic Neurons. Journal of Biological Chemistry 286(36):31781-31788. PMID: 21757747. Available at http://www.ncbi.nlm.nih.gov/pubmed/21757747
Mittag A, Pinto FE, Endringer DC, Tarnok A, Lenz D (2011) Cellular analysis by open-source software for affordable cytometry. Scanning:n/a-n/a. PMID: 21319173. Available at http://www.ncbi.nlm.nih.gov/pubmed/21319173
Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, Piqani B, Eisenhaure TM, Luo B, Grenier JK, Carpenter AE, Foo SY, Stewart SA, Stockwell BR, Hacohen N, Hahn WC, Lander ES, Sabatini DM, Root DE (2006) A Lentiviral RNAi Library for Human and Mouse Genes Applied to an Arrayed Viral High-Content Screen. Cell 124(6):1283-98. PMID: 16564017. Available at http://www.ncbi.nlm.nih.gov/pubmed/16564017
Moore TI, Chou C-S, Nie Q, Jeon NL, Yi T-M (2008) Robust Spatial Sensing of Mating Pheromone Gradients by Yeast Cells. PLoS ONE 3(12):e3865. PMID: 19052645. Available at http://www.ncbi.nlm.nih.gov/pubmed/19052645
Moores B, Drolle E, Attwood SJ, Simons J, Leonenko Z (2011) Effect of Surfaces on Amyloid Fibril Formation. PLoS ONE 6(10):e25954. PMID: 22016789. Available at http://www.ncbi.nlm.nih.gov/pubmed/22016789
Moreau D, Scott C, Gruenberg J (2011) A Novel Strategy to Identify Drugs that Interfere with Endosomal Lipids. CHIMIA International Journal for Chemistry 65(11):846-848. PMID: 22289369. Available at http://www.ncbi.nlm.nih.gov/pubmed/22289369
Morissette MR, Stricker JC, Rosenberg MA, Buranasombati C, Levitan EB, Mittleman MA, Rosenzweig A (2009) Effects of myostatin deletion in aging mice. Aging Cell 8(5):573-83. PMID: 19663901. Available at http://www.ncbi.nlm.nih.gov/pubmed/19663901
Mosaliganti K, Cooper L, Sharp R, Machiraju R, Leone G, Huang K, Saltz J (2007) Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Transactions on Visualization and Computer Graphics. PMID: 18467760. Available at http://www.ncbi.nlm.nih.gov/pubmed/18467760
Moy TI, Conery AL, Larkins-Ford J, Wu G, Mazitschek R, Casadei G, Lewis K, Carpenter AE, Ausubel FM (2009) High-throughput screen for novel antimicrobials using a whole animal infection model. ACS Chemical Biology 4(7):527-33. PMID: 19572548. Available at http://www.ncbi.nlm.nih.gov/pubmed/19572548
Mu JJ, Wang Y, Luo H, Leng M, Zhang JL, Yang T, Besusso D, Jung SY, Qin J (2007) A proteomic analysis of ataxia telangiectasia-mutated (ATM)/ATM-Rad3-related (ATR) substrates identifies the ubiquitin-proteasome system as a regulator for DNA damage checkpoints. Journal of Biological Chemistry 282(24):17330-4. PMID: 17478428. Available at http://www.ncbi.nlm.nih.gov/pubmed/17478428
Muellner MK, Nijman SMB (2010) High-content screens: Giving Rho(d) directions. Nature Chemical Biology 6(6):397-8. PMID: 20479746. Available at http://www.ncbi.nlm.nih.gov/pubmed/20479746
Muellner MK, Uras IZ, Gapp BV, Kerzendorfer C, Smida M, Lechtermann H, Craig-Mueller N, Colinge J, Duernberger G, Nijman SMB (2011) A chemical-genetic screen reveals a mechanism of resistance to PI3K inhibitors in cancer. Nature Chemical Biology 7(11):787-793. PMID: 21946274. Available at http://www.ncbi.nlm.nih.gov/pubmed/21946274
Mullenders J, Fabius AWM, van Dongen MMW, Kuiken HJ, Beijersbergen RL, Bernards R (2010) Interleukin-1R-Associated Kinase 2 Is a Novel Modulator of the Transforming Growth Factor Beta Signaling Cascade. Molecular Cancer Research 8(4):592-603. PMID: 20332216. Available at http://www.ncbi.nlm.nih.gov/pubmed/20332216
Muriel O, Echarri A, Hellriegel C, Pavon DM, Beccari L, Del Pozo MA (2011) Phosphorylated filamin A regulates actin-linked caveolae dynamics. Journal of Cell Science 124(16):2763-76. PMID: 21807941. Available at http://www.ncbi.nlm.nih.gov/pubmed/21807941
Murphy RF (2011) An active role for machine learning in drug development. Nature Chemical Biology 7(6):327-30. PMID: 21587249. Available at http://www.ncbi.nlm.nih.gov/pubmed/21587249
Nagele RG, Clifford PM, Siu G, Levin EC, Acharya NK, Han M, Kosciuk MC, Venkataraman V, Zavareh S, Zarrabi S, Kinsler K, Thaker NG, Nagele EP, Dash J, Wang HY, Levitas A (2011) Brain-Reactive Autoantibodies Prevalent in Human Sera Increase Intraneuronal Amyloid-ß1-42 Deposition. Journal of Alzheimer's Disease 25(4):605-22. PMID: 21483091. Available at http://www.ncbi.nlm.nih.gov/pubmed/21483091
Nandakumar V, Holl MR, Meldrum DR (2008) A flexible framework for automation of single cell and cell-to-cell interaction analyses. IEEE Conference on Automation Science and Engineering 2008:424-30. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4626576
Natorska J, Marek G, Hlawaty M, Sobczyk D, Sadowski J, Tracz W, Undas A (2009) Evidence for tissue factor expression in aortic valves in patients with aortic stenosis. Polish Archives of Internal Medicine 119(10):636-42. PMID: 19847139. Available at http://www.ncbi.nlm.nih.gov/pubmed/19847139
Natorska J, Marek G, Hlawaty M, Sadowski J, Tracz W, Undas A (2011) Fibrin presence within aortic valves in patients with aortic stenosis: Association with in vivo thrombin generation and fibrin clot properties. Thrombosis and Haemostasis 105(2):254-60. PMID: 21057695. Available at http://www.ncbi.nlm.nih.gov/pubmed/21057695
Natorska J, Wypasek E, Grudzień G, Sobczyk D, Marek G, Filip G, Sadowski J, Undas A (2011) Does Diabetes Accelerate the Progression of Aortic Stenosis through Enhanced Inflammatory Response within Aortic valves? Inflammation, epub ahead of print. PMID: 21935671. Available at http://www.ncbi.nlm.nih.gov/pubmed/21935671
Nguyen N, Norris E, Clemens M, Shin M (2011) in Lecture Notes in Computer Science 7009:209-216. PMID: none. Available at http://dx.doi.org/10.1007/978-3-642-24319-6_26
Nguyen HP, Chakravarthy S, Velásquez AC, McLane HL, Zeng L, Nakayashiki H, Park D-H, Collmer A, Martin GB (2010) Methods to Study PAMP-Triggered Immunity Using Tomato and Nicotiana benthamiana. Molecular Plant-Microbe Interactions 23(8):991-9. PMID: 20615110. Available at http://www.ncbi.nlm.nih.gov/pubmed/20615110
Niederlein A, Meyenhofer F, White D, Bickle M (2009) Image Analysis in High Content Screening. Combinatorial Chemistry and High Throughput Screening 12:899-907. PMID: none. Available at http://dx.doi.org/10.2174/138620709789383213
Nicolaije C, Koedam M, van Leeuwen JPTM (2012) Decreased oxygen tension lowers reactive oxygen species and apoptosis and inhibits osteoblast matrix mineralization through changes in early osteoblast differentiation. Journal of Cellular Physiology 227(4):1309-1318. PMID: 21604266. Available at http://www.ncbi.nlm.nih.gov/pubmed/21604266
Nir O, Bakal C, Perrimon N, Berger B (2010) Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen. Genome Research 20(3):372-80. PMID: 20144944. Available at http://www.ncbi.nlm.nih.gov/pubmed/20144944
O'Rourke EJ, Conery AL, Moy TI (2009) Whole animal high-throughput screens: the C. elegans model. Methods in Molecular Biology 486:250. PMID: 19347616. Available at http://www.ncbi.nlm.nih.gov/pubmed/19347616
Oehler C, O'Donoghue JA, Russell J, Zanzonico P, Lorenzen S, Ling CC, Carlin S (2011) 18F-Fluromisonidazole PET Imaging as a Biomarker for the Response to 5,6-Dimethylxanthenone-4-Acetic Acid in Colorectal Xenograft Tumors. Journal of Nuclear Medicine 52(3):437-44. PMID: 21321262. Available at http://www.ncbi.nlm.nih.gov/pubmed/21321262
O’Brien Lucy E, Soliman Sarah S, Li X, Bilder D (2011) Altered Modes of Stem Cell Division Drive Adaptive Intestinal Growth. Cell 147(3):603-614. PMID: 22036568. Available at http://www.ncbi.nlm.nih.gov/pubmed/22036568
Oh TI, Sung JH, Tatosian DA, Shuler ML, Kim D (2007) Real-time fluorescence detection of multiple microscale cell culture analog devices In situ. Cytometry Part A 71A(10):857-65. PMID: 17559134. Available at http://www.ncbi.nlm.nih.gov/pubmed/17559134
Ohi Y, Qin H, Hong C, Blouin L, Polo JM, Guo T, Qi Z, Downey SL, Manos PD, Rossi DJ, Yu J, Hebrok M, Hochedlinger K, Costello JF, Song JS, Ramalho-Santos M (2011) Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nature Cell Biology 13(5):541-549. PMID: 21499256. Available at http://www.ncbi.nlm.nih.gov/pubmed/21499256
Okoli I, Coleman JJ, Tempakakis E, An WF, Holson E, Wagner F, Conery AL, Larkins-Ford J, Wu G, Stern A, Ausubel FM, Mylonakis E (2009) Identification of Antifungal Compounds Active against Candida albicans Using an Improved High-Throughput Caenorhabditis elegans Assay. PLoS ONE 4(9):e7025. PMID: 19750012. Available at http://www.ncbi.nlm.nih.gov/pubmed/19750012
Ozaki Y-i, Uda S, Saito TH, Chung J, Kubota H, Kuroda S (2010) A Quantitative Image Cytometry Technique for Time Series or Population Analyses of Signaling Networks. PLoS ONE 5(4):e9955. PMID: 20376360. Available at http://www.ncbi.nlm.nih.gov/pubmed/20376360
Paget V, Sergent JA, Chevillard S (2011) Nano-silicon dioxide toxicological characterization on two human kidney cell lines. Journal of Physics: Conference Series 304(1):012080. PMID: none. Available at http://stacks.iop.org/1742-6596/304/i=1/a=012080
Páll T, Pink A, Kasak L, Turkina M, Anderson W, Valkna A, Kogerman P (2011) Soluble CD44 Interacts with Intermediate Filament Protein Vimentin on Endothelial Cell Surface. PLoS ONE 6(12):e29305. PMID: 2216242. Available at http://www.ncbi.nlm.nih.gov/pubmed/22216242
Palmer E, Freeman T (2005) Cell-based microarrays: current progress, future prospects. Pharmacogenomics 6(5):527-34. PMID: 16014002. Available at http://www.ncbi.nlm.nih.gov/pubmed/16014002
Palmer E. (2011) Cell-Based Microarrays: Overview. Methods in Molecular Biology 706:1-12. PMID: none. Available at http://www.ncbi.nlm.nih.gov/pubmed/21104050
Pan H, Yu J, Zhang L, Carpenter A, Zhu H, Li L, Ma D, Yuan J (2008) A novel small molecule regulator of guanine nucleotide exchange activity of the ADP-ribosylation factor and golgi membrane trafficking. Journal of Biological Chemistry 283(45):31087-96. PMID: 18799457. Available at http://www.ncbi.nlm.nih.gov/pubmed/18799457
Park MC, Hur JY, Cho HS, Park S-H, Suh KY (2011) High-throughput single-cell quantification using simple microwell-based cell docking and programmable time-course live-cell imaging. Lab on a Chip 11(1):79-86. PMID: 20957290. Available at http://www.ncbi.nlm.nih.gov/pubmed/20957290
Patterson JC, Klimenko ES, Thorner J (2010) Single-Cell Analysis Reveals That Insulation Maintains Signaling Specificity Between Two Yeast MAPK Pathways with Common Components. Science Signaling 3(144):ra75. PMID: 20959523. Available at http://www.ncbi.nlm.nih.gov/pubmed/20959523
Pau G, Fuchs F, Sklyar O, Boutros M, Huber W (2010) EBImage--an R package for image processing with applications to cellular phenotypes. Bioinformatics 26(7):979-81. PMID: 20338898. Available at http://www.ncbi.nlm.nih.gov/pubmed/20338898
Paul P, van den Hoorn T, Jongsma MLM, Bakker MJ, Hengeveld R, Janssen L, Cresswell P, Egan DA, van Ham M, ten Brinke A, Ovaa H, Beijersbergen RL, Kuijl C, Neefjes J (2011) A Genome-wide Multidimensional RNAi Screen Reveals Pathways Controlling MHC Class II Antigen Presentation. Cell 145(2):268-83. PMID: 21458045. Available at http://www.ncbi.nlm.nih.gov/pubmed/21458045
Pauley K, Satoh M, Chan A, Bubb M, Reeves W, Chan E (2008) Upregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patients. Arthritis Research & Therapy 10(4):R101. PMID: 18759964. Available at http://arthritis-research.com/content/10/4/R101
Pauley KM, Satoh M, Pauley BA, Dominguez-Gutierrez PR, Wallet SM, Holliday LS, Cha S, Reeves WH, Chan EKL (2009) Formation of GW/P bodies as marker for microRNA-mediated regulation of innate immune signaling in THP-1 cells. Immunology & Cell Biology 88(2):205-12. PMID: 19918258. Available at http://www.ncbi.nlm.nih.gov/pubmed/19918258
Peacock JG, Couch BA, Koleske AJ (2010) The Abl and Arg non-receptor tyrosine kinases regulate different zones of stress fiber, focal adhesion, and contractile network localization in spreading fibroblasts. Cytoskeleton 67(10):666-75. PMID: 20737438. Available at http://www.ncbi.nlm.nih.gov/pubmed/20737438
Pelkowski SD, Kapoor M, Richendrfer HA, Wang X, Colwill RM, Creton R (2011) A novel high-throughput imaging system for automated analyses of avoidance behavior in zebrafish larvae. Behavioural Brain Research 223(1):135-44. PMID: 21549762. Available at http://www.ncbi.nlm.nih.gov/pubmed/21549762
Peltier J, Conway A, Keung AJ, Schaffer DV (2010) Akt Increases Sox2 Expression in Adult Hippocampal Neural Progenitor Cells, but Increased Sox2 Does Not Promote Proliferation. Stem Cells and Development 20(7):1153-61. PMID: 21028992. Available at http://www.ncbi.nlm.nih.gov/pubmed/21028992
Peng H (2008) Bioimage informatics: a new area of engineering biology. Bioinformatics 24(17):1827-36. PMID: 18603566. Available at http://www.ncbi.nlm.nih.gov/pubmed/18603566
Perrimon N, Mathey-Prevot B (2007) Applications of high-throughput RNA interference screens to problems in cell and developmental biology. Genetics 175(1):7-16. PMID: 17244760. Available at http://www.ncbi.nlm.nih.gov/pubmed/17244760
Pincus Z, Theriot JA (2007) Comparison of quantitative methods for cell-shape analysis. Journal of Microscopy-Oxford 227(Pt 2):140-56. PMID: 17845709. Available at http://www.ncbi.nlm.nih.gov/pubmed/17845709
Placidi G, Cifone M, Cinque B, Franchi D, Giuliani M, La Torre C, Macchiarelli G, Maglione M, Maurizi A, Miconi G, Sotgiu A. (2010) Numerical Methods for the Semi-automatic Analysis of Multimodal Wound Healing Images. Lecture Notes in Computer Science 6026:151-62. PMID: none. Available at http://dx.doi.org/10.1007/978-3-642-12712-0_14
Poon SS, Wong JT, Saunders DN, Ma QC, McKinney S, Fee J, Aparicio SA (2008) Intensity calibration and automated cell cycle gating for high-throughput image-based siRNA screens of mammalian cells. Cytometry Part A 73A(10):904-17. PMID: 18698634. Available at http://www.ncbi.nlm.nih.gov/pubmed/18698634
Possemato R, Timmons JC, Bauerlein EL, Wada N, Baldwin A, Masutomi K, Hahn WC (2008) Suppression of hPOT1 in diploid human cells results in an hTERT-dependent alteration of telomere length dynamics. Molecular Cancer Research 6(10):1582-93. PMID: 18922974. Available at http://www.ncbi.nlm.nih.gov/pubmed/18922974
Prasad B, Badawy W (2008) High-throughput identification and classification algorithm for leukemia population statistics. Journal of Imaging Science and Technology 52(3):23. PMID: none. Available at http://dx.doi.org/10.2352/J.ImagingSci.Technol.(2008)52:3(030509)
Price CA, Symonova O, Mileyko Y, Hilley T, Weitz JS (2011) Leaf Extraction and Analysis Framework Graphical User Interface: Segmenting and Analyzing the Structure of Leaf Veins and Areoles. Plant Physiology 155(1):236-45. PMID: 21057114. Available at http://www.ncbi.nlm.nih.gov/pubmed/21057114
Prodanov D (2011) Data ontology and an information system realization for web-based management of image measurements. Frontiers in Neuroinformatics 5, epub ahead of print. PMID: 22275893. Available at http://www.ncbi.nlm.nih.gov/pubmed/22275893
Prot J-M, Bunescu A, Elena-Herrmann B, Aninat C, Snouber LC, Griscom L, Razan F, Bois FY, Legallais C, Brochot C, Corlu A, Dumas ME, Leclerc E (2012) Predictive toxicology using systemic biology and liver microfluidic "on chip" approaches: Application to acetaminophen injury. Toxicology and Applied Pharmacology 259(3):270-280. PMID: 22230336. Available at http://www.ncbi.nlm.nih.gov/pubmed/22230336
Puah WC, Cheok LP, Biro M, Ng WT, Wasser M (2011) TLM-Converter: reorganization of long time-lapse microscopy datasets for downstream image analysis. BioTechniques 51(1):49-54. PMID: 21781053. Available at http://www.ncbi.nlm.nih.gov/pubmed/21781053
Qiao G, Zong G, Wang J, Sun M (2011) Automatic toxic granulation detection and grading based on speeded up robust features. Cytometry Part A 79A(11):887-890. PMID: 22015730. Available at http://www.ncbi.nlm.nih.gov/pubmed/22015730
Quan J, Saaem I, Tang N, Ma S, Negre N, Gong H, White KP, Tian J (2011) Parallel on-chip gene synthesis and application to optimization of protein expression. Nature Biotechnology 29(5):449-52. PMID: 21516083. Available at http://www.ncbi.nlm.nih.gov/pubmed/21516083
Quaranta V, Tyson DR, Garbett SP, Weidow B, Harris MP, Georgescu W. (2009) Trait variability of cancer cells quantified by high-content automated microscopy of single cells. Methods in Enzymology: Computer Methods, Part B 467:23-57. PMID: 19897088. Available at http://www.ncbi.nlm.nih.gov/pubmed/19897088
Quevedo O, García-Luis J, Matos-Perdomo E, Aragón L, Machín F (2012) Nondisjunction of a Single Chromosome Leads to Breakage and Activation of DNA Damage Checkpoint in G2. PLoS Genetics 8(2):e1002509. PMID: 22363215. Available at http://dx.doi.org/10.1371%2Fjournal.pgen.1002509
Rae J, Fontaine F, Salim AA, Lo HP, Capon RJ, Parton RG, Martin S (2011) High-Throughput Screening of Australian Marine Organism Extracts for Bioactive Molecules Affecting the Cellular Storage of Neutral Lipids. PLoS ONE 6(8):e22868. PMID: 21857959. Available at http://www.ncbi.nlm.nih.gov/pubmed/21857959
Ramadan N, Flockhart I, Booker M, Perrimon N, Mathey-Prevot B (2007) Design and implementation of high-throughput RNAi screens in cultured Drosophila cells. Nature Protocols 2(9):2245-64. PMID: 17853882. Available at http://www.ncbi.nlm.nih.gov/pubmed/17853882
Ramo P, Sacher R, Snijder B, Begemann B, Pelkmans L (2009) CellClassifier: supervised learning of cellular phenotypes. Bioinformatics 25(22):3028-30. PMID: 19729371. Available at http://www.ncbi.nlm.nih.gov/pubmed/19729371
Razooky BS, Weinberger LS (2011) Mapping the architecture of the HIV-1 Tat circuit: A decision-making circuit that lacks bistability and exploits stochastic noise. Methods 53(1):68-77. PMID: 21167940. Available at http://www.ncbi.nlm.nih.gov/pubmed/21167940
Rehders M, Grosshauser BB, Smarandache A, Sadhukhan A, Mirastschijski U, Kempf J, Dunne M, Slenzka K, Brix K (2011) Effects of lunar and mars dust simulants on HaCaT keratinocytes and CHO-K1 fibroblasts. Advances in Space Research 47(7):1200-13. PMID: none. Available at http://www.sciencedirect.com/science/article/pii/S0273117710007647
Reis Y, Bernardo-Faura M, Richter D, Wolf T, Brors B, Hamacher-Brady A, Eils R, Brady NR (2012) Multi-Parametric Analysis and Modeling of Relationships between Mitochondrial Morphology and Apoptosis. PLoS ONE 7(1):e28694. PMID: 22272225. Available at http://www.ncbi.nlm.nih.gov/pubmed/22272225
Reiterer V, Grossniklaus L, Tschon T, Kasper CA, Sorg I, Arrieumerlou C (2011) Shigella flexneri type III secreted effector OspF reveals new crosstalks of proinflammatory signaling pathways during bacterial infection. Cellular Signalling 23(7):1188-96. PMID: 21402152. Available at http://www.ncbi.nlm.nih.gov/pubmed/21402152
Ribeiro I, Yuan L, Tanentzapf G, Dowling JJ, Kiger A (2011) Phosphoinositide Regulation of Integrin Trafficking Required for Muscle Attachment and Maintenance. PLoS Genetics 7(2):e1001295. PMID: 21347281. Available at http://www.ncbi.nlm.nih.gov/pubmed/21347281
Rimon N, Schuldiner M (2011) Getting the whole picture: combining throughput with content in microscopy. Journal of Cell Science 124(22):3743-3751. PMID: 22124141. Available at http://www.ncbi.nlm.nih.gov/pubmed/22124141
Rittscher J (2010) Characterization of Biological Processes through Automated Image Analysis. Annual Review of Biomedical Engineering 12(1):315-44. PMID: 20482277. Available at http://www.ncbi.nlm.nih.gov/pubmed/20482277
Ritzerfeld J, Remmele S, Wang T, Temmerman K, Brügger B, Wegehingel S, Tournaviti S, Strating JRPM, Wieland FT, Neumann B, Ellenberg J, Lawerenz C, Hesser J, Erfle H, Pepperkok R, Nickel W (2011) Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of SRC kinases. Genome Research 21(11):1955-1968. PMID: 21795383. Available at http://www.ncbi.nlm.nih.gov/pubmed/21795383
Roch-Lefevre S, Mandina T, Voisin P, Gaetan G, Mesa JEG, Valente M, Bonnesoeur P, Garcia O, Voisin P, Roy L (2010) Quantification of gamma-H2AX Foci in Human Lymphocytes: A Method for Biological Dosimetry after Ionizing Radiation Exposure. Radiation Research 174(2):185-94. PMID: 20681785. Available at http://www.ncbi.nlm.nih.gov/pubmed/20681785
Rocha N, Kuijl C, van der Kant R, Janssen L, Houben D, Janssen H, Zwart W, Neefjes J (2009) Cholesterol sensor ORP1L contacts the ER protein VAP to control Rab7-RILP-p150Glued and late endosome positioning. Journal of Cell Biology 185(7):1209-25. PMID: 19564404. Available at http://www.ncbi.nlm.nih.gov/pubmed/19564404
Rodier F, Coppe J-P, Patil CK, Hoeijmakers WAM, Munoz DP, Raza SR, Freund A, Campeau E, Davalos AR, Campisi J (2009) Persistent DNA damage signalling triggers senescence-associated inflammatory cytokine secretion. Nature Cell Biology 11(9):973-79. PMID: 19597488. Available at http://www.ncbi.nlm.nih.gov/pubmed/19597488
Rowland AF, Larance M, Hughes WE, James DE (2011) Identification of RhoGAP22 as an Akt-Dependent Regulator of Cell Motility in Response to Insulin. Molecular and Cellular Biology 31(23):4789-4800. PMID: 21969604. Available at http://www.ncbi.nlm.nih.gov/pubmed/21969604
Ru X, Jian W, Jianhua W. (2009) A New Medical Segmentation Method Based on Voronoi Diagrams and Region Growing. Image and Signal Processing, 2009 CISP '09 2nd International Congress on: 1-4. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5301362
Rush L (2007) Noteworthy. Veterinary Pathology 44(4):556-7. PMID: none. Available at http://www.vetpathology.org
Ruusuvuori P, Aijo T, Chowdhury S, Garmendia-Torres C, Selinummi J, Birbaumer M, Dudley A, Pelkmans L, Yli-Harja O (2010) Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images. BMC Bioinformatics 11(1):248. PMID: 20465797. Available at http://www.ncbi.nlm.nih.gov/pubmed/20465797
Sacher R, Stergiou L, Pelkmans L (2008) Lessons from genetics: interpreting complex phenotypes in RNAi screens. Current Opinion in Cell Biology 20(4):483-9. PMID: 18602470. Available at http://www.ncbi.nlm.nih.gov/pubmed/18602470
Saeed MF, Kolokoltsov AA, Albrecht T, Davey RA (2010) Cellular Entry of Ebola Virus Involves Uptake by a Macropinocytosis-Like Mechanism and Subsequent Trafficking through Early and Late Endosomes. PLoS Pathogens 6(9):e1001110. PMID: 20862315. Available at http://www.ncbi.nlm.nih.gov/pubmed/20862315
Saha K, Keung AJ, Irwin EF, Li Y, Little L, Schaffer DV, Healy KE (2008) Substrate modulus directs neural stem cell behavior. Biophysical Journal 95(9):4426-38. PMID: 18658232. Available at http://www.ncbi.nlm.nih.gov/pubmed/18658232
Saleem RA, Aitchison JD (2010) Systems cell biology of the mitotic spindle. Journal of Cell Biology 188(1):7-9. PMID: 20065087. Available at http://www.ncbi.nlm.nih.gov/pubmed/20065087
Salim AA, Rae J, Fontaine F, Conte MM, Khalil Z, Martin S, Parton RG, Capon RJ (2010) Heterofibrins: inhibitors of lipid droplet formation from a deep-water southern Australian marine sponge, Spongia (Heterofibria) sp. Organic & Biomolecular Chemistry 8(14):3188-94. PMID: 20626092. Available at http://www.ncbi.nlm.nih.gov/pubmed/20626092
Sant’Anna LB, Cargnoni A, Ressel L, Vanosi G, Parolini O (2011) Amniotic Membrane Application Reduces Liver Fibrosis in a Bile Duct Ligation Rat Model. Cell Transplantation 20(3):441-53. PMID: 20719087. Available at http://www.ncbi.nlm.nih.gov/pubmed/20719087
Santella A, Du Z, Nowotschin S, Hadjantonakis A-K, Bao Z (2010) A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. BMC Bioinformatics 11(1):580. PMID: 21114815. Available at http://www.ncbi.nlm.nih.gov/pubmed/21114815
Schipke J, Pohlmann A, Diestel R, Binz A, Rudolph K, Nagel C-H, Bauerfeind R, Sodeik B (2012) The C Terminus of the Large Tegument Protein pUL36 Contains Multiple Capsid Binding Sites That Function Differently during Assembly and Cell Entry of Herpes Simplex Virus. Journal of Virology 86(7):3682-3700. PMID: 22258258. Available at http://www.ncbi.nlm.nih.gov/pubmed/22258258
Schlumberger MC, Kappeli R, Wetter M, Muller AJ, Misselwitz B, Dilling S, Kremer M, Hardt WD (2007) Two newly identified SipA domains (F1, F2) steer effector protein localization and contribute to Salmonella host cell manipulation. Molecular Microbiology 65(3):741-60. PMID: 17635190. Available at http://www.ncbi.nlm.nih.gov/pubmed/17635190
Schneider S, Lenz D, Holzer M, Palme K, Suss R (2010) Intracellular FRET analysis of lipid/DNA complexes using flow cytometry and fluorescence imaging techniques. Journal of Controlled Release 145(3):289-96. PMID: 20417238. Available at http://www.ncbi.nlm.nih.gov/pubmed/20417238
Schroeder T (2011) Long-term single-cell imaging of mammalian stem cells. Nature Methods 8(4s): S30-S35. PMID: 21451514. Available at http://www.ncbi.nlm.nih.gov/pubmed/21451514
Selinummi J, Ruusuvuori P, Podolsky I, Ozinsky A, Gold E, Yli-Harja O, Aderem A, Shmulevich I (2009) Bright Field Microscopy as an Alternative to Whole Cell Fluorescence in Automated Analysis of Macrophage Images. PLoS ONE 4(10):e7497. PMID: 19847301. Available at http://www.ncbi.nlm.nih.gov/pubmed/19847301
Sergent J-A, Paget V, Chevillard S (2012) Toxicity and Genotoxicity of Nano-SiO2 on Human Epithelial Intestinal HT-29 Cell Line. Annals of Occupational Hygiene, epub ahead of print. PMID: 22378843. Available at http://www.ncbi.nlm.nih.gov/pubmed/22378843
Shamir L, Orlov N, Eckley DM, Macura T, Johnston J, Goldberg IG (2008) Wndchrm - an open source utility for biological image analysis. Source Code for Biology and Medicine 3:13. PMID: 18611266. Available at http://www.ncbi.nlm.nih.gov/pubmed/18611266
Shamir L, Delaney JD, Orlov N, Eckley DM, Goldberg IG (2010) Pattern Recognition Software and Techniques for Biological Image Analysis. PLoS Computational Biology 6(11):e1000974. PMID: 21124870. Available at http://www.ncbi.nlm.nih.gov/pubmed/21124870
Shamir L (2011) Assessing the efficacy of low-level image content descriptors for computer-based fluorescence microscopy image analysis. Journal of Microscopy 243(3):284-292. PMID: 21605118. Available at http://www.ncbi.nlm.nih.gov/pubmed/21605118
Shedden K, Rosania GR (2010) Chemical address tags of fluorescent bioimaging probes. Cytometry Part A 77A(5):429-38. PMID: 20104576. Available at http://www.ncbi.nlm.nih.gov/pubmed/20104576
Short B (2009) Cell biologists expand their networks. Journal of Cell Biology 186(3):305-11. PMID: 19667124. Available at http://www.ncbi.nlm.nih.gov/pubmed/19667124
Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Alaluf I, Swerdlin N, Perzov N, Danon T, Liron Y, Raveh T, Carpenter AE, Lahav G, Alon U (2006) Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. Nature Methods 3(7):525-31. PMID: 16791210. Available at http://www.ncbi.nlm.nih.gov/pubmed/16791210
Simpson JC (2009) Screening the secretion machinery: High throughput imaging approaches to elucidate the secretory pathway. Seminars in Cell & Developmental Biology 20(8):903-9. PMID: 19660568. Available at http://www.ncbi.nlm.nih.gov/pubmed/19660568
Sims D, Duchek P, Baum B (2009) PDGF/VEGF signaling controls cell size in Drosophila. Genome Biology 10(2):R20. PMID: 19216764. Available at http://www.ncbi.nlm.nih.gov/pubmed/19216764
Smith ZD, Nachman I, Regev A, Meissner A (2010) Dynamic single-cell imaging of direct reprogramming reveals an early specifying event. Nature Biotechnology 28(5):521-6. PMID: 20436460. Available at http://www.ncbi.nlm.nih.gov/pubmed/20498327
Snijder B, Pelkmans L (2011) Origins of regulated cell-to-cell variability. Nature Reviews Molecular Cell Biology 12(2):119-25. PMID: 21224886. Available at http://www.ncbi.nlm.nih.gov/pubmed/21224886
Sommer C, Straehle C, Kothe U, Hamprecht FA. (2011) Ilastik: Interactive learning and segmentation toolkit. Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on: 230-3. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5872394
Song J, Shea CR (2010) Benign versus malignant parakeratosis: a nuclear morphometry study. Modern Pathology. PMID: 20190731. Available at http://www.ncbi.nlm.nih.gov/pubmed/20190731
Sørensen J, Haubjerg Nicolaisen M, Ron E, Simonet P (2009) Molecular tools in rhizosphere microbiology—from single-cell to whole-community analysis. Plant and Soil 321(1):483-512. PMID: none. Available at http://dx.doi.org/10.1007/s11104-009-9946-8
Spiller DG, Wood CD, Rand DA, White MRH (2010) Measurement of single-cell dynamics. Nature 465(7299):736-45. PMID: 20535203. Available at http://www.ncbi.nlm.nih.gov/pubmed/20535203
Sprindzuk MV (2010) Angiogenesis in thyroid malignant neoplasm: State of the art and advances of the modern digital pathology and nanotechnology. Journal of Clinical Pathology & Forensic Medicine 1(3):16-34. PMID: None. Available at http://www.academicjournals.org/JCPFM/abstracts/abstracts/abstracts2010/Nov/Sprindzuk.htm
Srinivasa G, Fickus MC, Guo YS, Linstedt AD, Kovacevic J (2009) Active Mask Segmentation of Fluorescence Microscope Images. IEEE Transactions in Image Processing:1817-29. PMID: 19380268. Available at http://www.ncbi.nlm.nih.gov/pubmed/19380268
Starkuviene V, Pepperkok R, Erfle H (2007) Transfected cell microarrays: an efficient tool for high-throughput functional analysis. Expert Review of Proteomics. PMID: 17705706. Available at http://www.ncbi.nlm.nih.gov/pubmed/17705706
Stoma S, Frohlich M, Gerber S, Klipp E (2011) STSE: Spatio-Temporal Simulation Environment Dedicated to Biology. BMC Bioinformatics 12(1):126. PMID: 21527030. Available at http://www.ncbi.nlm.nih.gov/pubmed/21527030
Strachan RT, Sciaky N, Cronan MR, Kroeze WK, Roth BL (2010) Genetic Deletion of p90 Ribosomal S6 Kinase 2 Alters Patterns of 5-Hydroxytryptamine2A Serotonin Receptor Functional Selectivity. Molecular Pharmacology 77(3):327-38. PMID: 19933401. Available at http://www.ncbi.nlm.nih.gov/pubmed/19933401
Stuchbury G, Münch G (2010) Optimizing the generation of stable neuronal cell lines via pre-transfection restriction enzyme digestion of plasmid DNA. Cytotechnology:1-6. PMID: 20424915. Available at http://www.ncbi.nlm.nih.gov/pubmed/20424915
Suar M, Periaswamy B, Songhet P, Misselwitz B, Muller A, Kappeli R, Kremer M, Heikenwalder M, Hardt W-D (2009) Accelerated Type III Secretion System 2-Dependent Enteropathogenesis by a Salmonella enterica Serovar Enteritidis PT4/6 Strain. Infection and Immunity 77(9):3569-77. PMID: 19528213. Available at http://www.ncbi.nlm.nih.gov/pubmed/19528213
Sumiyoshi M, Ricciuto J, Tisdale A, Gipson IK, Mantelli F, Argueso P (2008) Antiadhesive character of mucin O-glycans at the apical surface of corneal epithelial cells. Investigative Ophthalmology & Visual Science 49(1):197-203. PMID: 18172093. Available at http://www.ncbi.nlm.nih.gov/pubmed/18172093
Sung JH, Shuler ML (2009) A micro cell culture analog ([micro sign]CCA) with 3-D hydrogel culture of multiple cell lines to assess metabolism-dependent cytotoxicity of anti-cancer drugs. Lab on a Chip 9(10):1385-94. PMID: 19417905. Available at http://www.ncbi.nlm.nih.gov/pubmed/19417905
Swedlow JR, Goldberg IG, Eliceiri KW (2009) Bioimage Informatics for Experimental Biology. Annual Review of Biophysics 38(1):327-46. PMID: 19416072. Available at http://www.ncbi.nlm.nih.gov/pubmed/19416072
Swedlow JR (2012) Innovation in biological microscopy: Current status and future directions. BioEssays, epub ahead of print. PMID: 22408015. Available at http://www.ncbi.nlm.nih.gov/pubmed/22408015
Tampakakis E, Okoli I, Mylonakis E (2008) A C. elegans-based, whole animal, in vivo screen for the identification of antifungal compounds. Nature Protocols 3(12):1925-31. PMID: 19180076. Available at http://www.ncbi.nlm.nih.gov/pubmed/19180076
Tangemo C, Ronchi P, Colombelli J, Haselmann U, Simpson JC, Antony C, Stelzer EHK, Pepperkok R, Reynaud EG (2011) A novel laser nanosurgery approach supports de novo Golgi biogenesis in mammalian cells. Journal of Cell Science 124(6):978-87. PMID: 21378314. Available at http://www.ncbi.nlm.nih.gov/pubmed/21378314
Thomas N (2010) High-content screening: a decade of evolution. Journal of Biomolecular Screening 15(1):1-9. PMID: 20008124. Available at http://www.ncbi.nlm.nih.gov/pubmed/20008124
Thomas ZI, Gibson W, Sexton JZ, Aird KM, Ingram SM, Aldrich A, Lyerly HK, Devi GR, Williams KP (2011) Targeting GLI1 expression in human inflammatory breast cancer cells enhances apoptosis and attenuates migration. British Journal of Cancer 104(10):1575-86. PMID: 21505458. Available at http://www.ncbi.nlm.nih.gov/pubmed/21505458
Thompson KE, Bashor CJ, Lim WA, Keating AE (2012) SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains. ACS Synthetic Biology, epub ahead of print. PMID: 21949368. Available at http://www.ncbi.nlm.nih.gov/pubmed/21949368
Tian J, Alimperti S, Lei P, Andreadis ST (2010) Lentiviral microarrays for real-time monitoring of gene expression dynamics. Lab on a Chip 10(15):1967-75. PMID: 20520864. Available at http://www.ncbi.nlm.nih.gov/pubmed/20520864
Togriarini I, Sorace S, Zonefrati R, Galli G, Gozzini A, Sala SC, Thyrion GDZ, Carossino AM, Tanini A, Mavilia C, Azzari C, Sbaiz F, Facchini A, Capanna R, Brandi ML (2008) In vitro differentiation of human mesenchymal stem cells on Ti6Al4V surfaces. Biomaterials 29(7):809-24. PMID: 18022689. Available at http://www.ncbi.nlm.nih.gov/pubmed/18022689
Tominaga D, Iguchi F, Horimoto K, Akiyama Y (2007) High-throughput Automated Image Processing System for Cell Array Observations. IPSJ Digital Courier 3:728-35. PMID: none. Available at http://www.ipsj.or.jp/08editt/dc/data/vol_03.html
Tomkiewicz D, Casadei G, Larkins-Ford J, Moy TI, Garner J, Bremner JB, Ausubel FM, Lewis K, Kelso MJ (2010) Berberine-INF55 (5-Nitro-2-Phenylindole) Hybrid Antimicrobials: Effects of Varying the Relative Orientation of the Berberine and INF55 Components. Antimicrobial Agents and Chemotherapy 54(8):3219-24. PMID: 20498327. Available at http://www.ncbi.nlm.nih.gov/pubmed/20498327
Trajkovski M, Hausser J, Soutschek J, Bhat B, Akin A, Zavolan M, Heim MH, Stoffel M (2011) MicroRNAs 103 and 107 regulate insulin sensitivity. Nature 474(7353):649-653. PMID: 21654750. Available at http://dx.doi.org/10.1038/nature10112
Truong TV, Supatto W (2011) Toward high-content/high-throughput imaging and analysis of embryonic morphogenesis. genesis 49(7):555-69. PMID: 21504047. Available at http://www.ncbi.nlm.nih.gov/pubmed/21504047
Truttmann MC, Misselwitz B, Huser S, Hardt W-D, Critchley DR, Dehio C (2011) Bartonella henselae engages inside-out and outside-in signaling by integrin β1 and talin1 during invasome-mediated bacterial uptake. Journal of Cell Science 124(21):3591-3602. PMID: 22045736. Available at http://www.ncbi.nlm.nih.gov/pubmed/22045736
Truttmann MC, Rhomberg TA, Dehio C (2011) Combined action of the type IV secretion effector proteins BepC and BepF promotes invasome formation of Bartonella henselae on endothelial and epithelial cells. Cellular Microbiology 13(2):284-99. PMID: 20964799. Available at http://www.ncbi.nlm.nih.gov/pubmed/20964799
Udelnow A, Kreyes A, Ellinger S, Landfester K, Walther P, Klapperstueck T, Wohlrab J, Henne-Bruns D, Knippschild U, Wurl P (2011) Omeprazole Inhibits Proliferation and Modulates Autophagy in Pancreatic Cancer Cells. PLoS ONE 6(5):e20143. PMID: 21629657. Available at http://www.ncbi.nlm.nih.gov/pubmed/2162965
Unadkat HV, Hulsman M, Cornelissen K, Papenburg BJ, Truckenmüller RK, Post GF, Uetz M, Reinders MJT, Stamatialis D, van Blitterswijk CA, de Boer J (2011) An algorithm-based topographical biomaterials library to instruct cell fate. Proceedings of the National Academy of Sciences 108(40):16565-16570. PMID: 21949368. Available at http://www.ncbi.nlm.nih.gov/pubmed/21949368
Ungrin M, O’Connor M, Eaves C, Zandstra PW (2007) Phenotypic Analysis of Human Embryonic Stem Cells Current Protocols in Stem Cell Biology:1B.3.1-B.3.25. PMID: 18785161. Available at http://www.ncbi.nlm.nih.gov/pubmed/18785161
Urban MJ, Li C, Yu C, Lu Y, Krise JM, McIntosh MP, Rajewski RA, Blagg BSJ, Dobrowsky RT (2010) Inhibiting heat-shock protein 90 reverses sensory hypoalgesia in diabetic mice. ASN Neuro 2(4):189-99. PMID: 20711301. Available at http://www.ncbi.nlm.nih.gov/pubmed/20711301
Usaj M, Torkar D, Kanduser M, Miklavcic D (2011) Cell counting tool parameters optimization approach for electroporation efficiency determination of attached cells in phase contrast images. Journal of Microscopy 241(3):303-14. PMID: 21118234. Available at http://www.ncbi.nlm.nih.gov/pubmed/21118234
Valenzuela MJ, Dean SK, Sachdev P, Tuch BE, Sidhu KS (2008) Neural Precursors from Canine Skin: A New Direction for Testing Autologous Cell Replacement in the Brain. Stem Cells and Development 17(6):1087. PMID: 18513165. Available at http://www.ncbi.nlm.nih.gov/pubmed/18513165
van Amerongen R, Nawijn MC, Lambooij JP, Proost N, Jonkers J, Berns A (2010) Frat oncoproteins act at the crossroad of canonical and noncanonical Wnt-signaling pathways. Oncogene 29(1):93-104. PMID: 19802005. Available at http://www.ncbi.nlm.nih.gov/pubmed/19802005
van Hooijdonk L, Ichwan M, Dijkmans T, Schouten T, de Backer M, Adan R, Verbeek F, Vreugdenhil E, Fitzsimons C (2009) Lentivirus-mediated transgene delivery to the hippocampus reveals sub-field specific differences in expression. BMC Neuroscience 10(1):2. PMID: 19144149. Available at http://www.ncbi.nlm.nih.gov/pubmed/19144149
Vega FM, Fruhwirth G, Ng T, Ridley AJ (2011) RhoA and RhoC have distinct roles in migration and invasion by acting through different targets. Journal of Cell Biology 193(4):655-65. PMID: 2157639. Available at http://www.ncbi.nlm.nih.gov/pubmed/21576392
Velichkova M, Juan J, Kadandale P, Jean S, Ribeiro I, Raman V, Stefan C, Kiger AA (2010) Drosophila Mtm and class II PI3K coregulate a PI(3)P pool with cortical and endolysosomal functions. Journal of Cell Biology 190(3):407-25. PMID: 20696708 Available at http://www.ncbi.nlm.nih.gov/pubmed/20696708
Vendrell M, Lee J-S, Chang Y-T (2010) Diversity-oriented fluorescence library approaches for probe discovery and development. Current Opinion in Chemical Biology 14(3):383-9. PMID: 20227904 Available at http://www.ncbi.nlm.nih.gov/pubmed/20227904
Viet CT, Ye Y, Dang D, Lam DK, Achdjian S, Zhang J, Schmidt BL (2011) Re-expression of the methylated EDNRB gene in oral squamous cell carcinoma attenuates cancer-induced pain. PAIN 152(10):2323-2332. PMID: 21782343. Available at http://www.ncbi.nlm.nih.gov/pubmed/21782343
Vigh L, Torok Z, Balagh G, Glatz A, Piotto S, Horvath I (2007) Membrane-Regulated Stress Response: A Theoretical and Practical Approach. Molecular Aspects of the Stress Response: Chaperones, Membranes and Networks 594:114-31. PMID: none. Available at http://www.ncbi.nlm.nih.gov/pubmed/17205680
Vink CA, Gaspar HB, Gabriel R, Schmidt M, McIvor RS, Thrasher AJ, Qasim W (2009) Sleeping Beauty Transposition From Nonintegrating Lentivirus. Molecular Therapy. PMID: 19417741. Available at http://www.ncbi.nlm.nih.gov/pubmed/19417741
Vizeacoumar FJ, Chong Y, Boone C, Andrews BJ (2009) A picture is worth a thousand words: Genomics to phenomics in the yeast Saccharomyces cerevisiae. FEBS Letters. PMID: 19351535. Available at http://www.ncbi.nlm.nih.gov/pubmed/19351535
Vjestica A, Tang XZ, Oliferenko S (2008) The actomyosin ring recruits early secretory compartments to the division site in fission yeast. Molecular Biology of the Cell 19(3):1125-38. PMID: 18184749. Available at http://www.ncbi.nlm.nih.gov/pubmed/18184749
Vokes MS, Carpenter AE (2008) Using CellProfiler for automatic identification and measurement of biological objects in images. Current Protocols in Molecular Biology 82:14.7.1-.7.2. PMID: 18425761. Available at http://www.ncbi.nlm.nih.gov/pubmed/18425761
Vokes MS, Carpenter AE (2008) CellProfiler: Open-Source Software to Automatically Quantify Images. Microscopy Today 16(5):38-9. PMID: none.
Volkmer B, Heinemann M (2011) Condition-Dependent Cell Volume and Concentration of <italic>Escherichia coli</italic> to Facilitate Data Conversion for Systems Biology Modeling. PLoS ONE 6(7):e23126. PMID: 21829590. Available at http://www.ncbi.nlm.nih.gov/pubmed/21829590
Walter T, Held M, Neumann B, Hériché J-K, Conrad C, Pepperkok R, Ellenberg J (2010) Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging. Journal of Structural Biology 170(1):1-9. PMID: 19854275. Available at http://www.ncbi.nlm.nih.gov/pubmed/19854275
Wang F, Flanagan J, Su N, Wang L-C, Bui S, Nielson A, Wu X, Vo H-T, Ma X-J, Luo Y (2012) RNAscope: A Novel in Situ RNA Analysis Platform for Formalin-Fixed, Paraffin-Embedded Tissues. The Journal of Molecular Diagnostics 14(1):22-29. PMID: 22166544. Available at http://www.ncbi.nlm.nih.gov/pubmed/22166544
Wang J, Zhou X, Bradley PL, Chang SF, Perrimon N, Wong ST (2008) Cellular phenotype recognition for high-content RNA interference genome-wide screening. Journal of Biomolecular Screening 13(1):29-39. PMID: 18227224. Available at http://www.ncbi.nlm.nih.gov/pubmed/18227224
Wang J, Zhou X, Li F, Bradley PL, Chang S-F, Perrimon N, Wong STC (2009) An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling. Journal of Biomedical Informatics 42(1):32-40. PMID: 18547870. Available at http://www.ncbi.nlm.nih.gov/pubmed/18547870
Wang J, Zhou X, Li F, Wong ST (2006) Classify cellular phenotype in high-throughput fluorescence microscopy images for RNAi genome-wide screening IEEE Life Sciences Systems and Applications workshop:1-2. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4015805
Wang Q, Niemi J, Tan C-M, You L, West M (2010) Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy. Cytometry Part A 77A(1):101-10. PMID: 19845017. Available at http://www.ncbi.nlm.nih.gov/pubmed/19845017
Wei X, Yanbo W, Ong SH, Joo Hwee L, Lijun J. (2010) Learning cell geometry models for cell image simulation: An unbiased approach. Image Processing (ICIP), 2010 17th IEEE International Conference on: 1897-900. PMID: none. Available at http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5652455
Weibrecht I, Grundberg I, Nilsson M, Soderberg O (2011) Simultaneous Visualization of Both Signaling Cascade Activity and End-Point Gene Expression in Single Cells. PLoS ONE 6(5):e20148. PMID: 21647446. Available at http://www.ncbi.nlm.nih.gov/pubmed/21647446
Weigum SE, Floriano PN, Redding SW, Yeh C-K, Westbrook SD, McGuff HS, Lin A, Miller FR, Villarreal F, Rowan SD, Vigneswaran N, Williams MD, McDevitt JT (2010) Nano-Bio-Chip Sensor Platform for Examination of Oral Exfoliative Cytology. Cancer Prevention Research 3(4):518-28. PMID: 20332305. Available at http://www.ncbi.nlm.nih.gov/pubmed/20332305
Weinkauf H, Brehm-Stecher BF (2009) Enhanced dark field microscopy for rapid artifact-free detection of nanoparticle binding to Candida albicans cells and hyphae. Journal of Biotechnology 4(6):871-9. PMID: Available at http://www.ncbi.nlm.nih.gov/pubmed/19492326
Weisinger RS, Stanley TK, Begg DP, Weisinger HS, Spark KJ, Jois M (2009) Angiotensin converting enzyme inhibition lowers body weight and improves glucose tolerance in C57BL/6J mice maintained on a high fat diet. Physiology & Behavior 98(1-2):192-7. PMID: 19465040. Available at http://www.ncbi.nlm.nih.gov/pubmed/19465040
Wenzel J, Held C, Palmisano R, Teufel S, David J-P, Wittenberg T, Lang R (2011) Measurement of TLR-induced macrophage spreading by automated image analysis: differential role of Myd88 and MAPK in early and late responses. Frontiers in Physiology 2:71. PMID: 22028692. Available at http://www.ncbi.nlm.nih.gov/pubmed/22028692
Wheeler DB, Bailey SN, Guertin DA, Carpenter AE, Higgins CO, Sabatini DM (2004) RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells. Nature Methods 1(2):127-32. PMID: 15782175. Available at http://www.ncbi.nlm.nih.gov/pubmed/15782175
Wheeler DB, Carpenter AE, Sabatini DM (2005) Cell microarrays and RNA interference chip away at gene function. Nature Genetics 37 Suppl:S25-30. PMID: 15920526. Available at http://www.ncbi.nlm.nih.gov/pubmed/15920526
Wheeler RT, Kombe D, Agarwala SD, Fink GR (2008) Dynamic, Morphotype-Specific Candida albicans β-Glucan Exposure during Infection and Drug Treatment. PLoS Pathogens 4(12):e1000227. PMID: 19057660. Available at http://www.ncbi.nlm.nih.gov/pubmed/19057660
White S, Anandraj A, Bux F (2011) PAM fluorometry as a tool to assess microalgal nutrient stress and monitor cellular neutral lipids. Bioresource Technology 102(2):1675-82. PMID: 20965719. Available at http://www.ncbi.nlm.nih.gov/pubmed/20965719
Wild T, Horvath P, Wyler E, Widmann B, Badertscher L, Zemp I, Kozak K, Csucs G, Lund E, Kutay U (2010) A Protein Inventory of Human Ribosome Biogenesis Reveals an Essential Function of Exportin 5 in 60S Subunit Export. PLoS Biology 8(10):e1000522. PMID: 21048991. Available at http://www.ncbi.nlm.nih.gov/pubmed/21048991
Wiley DJ, Rosqvist R, Schesser K (2007) Induction of the Yersinia type 3 secretion system as an all-or-none phenomenon. Journal of Molecular Biology 373(1):27-37. PMID: 17825321. Available at http://www.ncbi.nlm.nih.gov/pubmed/17825321
Wlodkowic D, Faley S, Skommer J, McGuinness D, Cooper JM (2009) Biological Implications of Polymeric Microdevices for Live Cell Assays. Analytical Chemistry 81(23):9828-33. PMID: PMID: 19902928. Available at http://www.ncbi.nlm.nih.gov/pubmed/19902928
Wolinski H, Natter K, Kohlwein SD (2009) The Fidgety Yeast: Focus on High-Resolution Live Yeast Cell Microscopy. Yeast Functional Genomics and Proteomics:75-99. PMID: 19521820. Available at http://www.ncbi.nlm.nih.gov/pubmed/19521820
Wolinski H, Petrovic U, Mattiazzi M, Petschnigg J, Heise B, Natter K, Kohlwein SD (2009) Imaging-Based Live Cell Yeast Screen Identifies Novel Factors Involved in Peroxisome Assembly. Journal of Proteome Research 8(1):20-7. PMID: 19118449. Available at http://www.ncbi.nlm.nih.gov/pubmed/19118449
Wolinski H, Bredies K, Kohlwein SD (2012) in Methods in Cell Biology 108:345-365. PMID: 22325610. Available at http://www.ncbi.nlm.nih.gov/pubmed/22325610
Wong AC, Sandesara RG, Mulherkar N, Whelan SP, Chandran K (2010) A Forward Genetic Strategy Reveals Destabilizing Mutations in the Ebolavirus Glycoprotein That Alter Its Protease Dependence during Cell Entry. Journal of Virology 84(1):163-75. PMID: 19846533. Available at http://www.ncbi.nlm.nih.gov/pubmed/19846533
Worster DT, Schmelzle T, Solimini NL, Lightcap ES, Millard B, Mills GB, Brugge JS, Albeck JG (2012) Akt and ERK Control the Proliferative Response of Mammary Epithelial Cells to the Growth Factors IGF-1 and EGF Through the Cell Cycle Inhibitor p57Kip2. Science Signaling 5(214):ra19. PMID: 22394561. Available at http://www.ncbi.nlm.nih.gov/pubmed/22394561
Wu PI, Minisini S, Edelman ER (2009) Intramuscular drug transport under mechanical loading: Resonance between tissue function and uptake. Journal of Controlled Release 136(2):99-109. PMID: 19331855. Available at http://www.ncbi.nlm.nih.gov/pubmed/19331855
Yamauchi Y, Boukari H, Banerjee I, Sbalzarini IF, Horvath P, Helenius A (2011) Histone Deacetylase 8 Is Required for Centrosome Cohesion and Influenza A Virus Entry. PLoS Pathog 7(10):e1002316. PMID: 22046129. Available at http://www.ncbi.nlm.nih.gov/pubmed/22046129
Yan P, Zhou X, Shah M, Wong ST (2008) Automatic segmentation of high-throughput RNAi fluorescent cellular images. IEEE Transactions in Information Technology in Biomedicine 12(1):109-17. PMID: 18270043. Available at http://www.ncbi.nlm.nih.gov/pubmed/18270043
Yang YS, Harel NY, Strittmatter SM (2009) Reticulon-4A (Nogo-A) Redistributes Protein Disulfide Isomerase to Protect Mice from SOD1-Dependent Amyotrophic Lateral Sclerosis. Journal of Neuroscience 29(44):13850-9. PMID: 1988999. Available at http://www.ncbi.nlm.nih.gov/pubmed/19889996
Yarmush ML, King KR (2009) Living-Cell Microarrays. Annual Review of Biomedical Engineering 11(1):235-57. PMID: 19413510. Available at http://www.ncbi.nlm.nih.gov/pubmed/19413510
Yim PB, Clarke ML, McKinstry M, Lacerda SHDP, III LFP, Dobrovolskaia MA, Kang H, Read TD, Sozhamannan S, Hwang J (2009) Quantitative characterization of quantum dot-labeled lambda phage for Escherichia coli detection. Biotechnology and Bioengineering 104(6):1059-67. PMID: 19634184. Available at http://www.ncbi.nlm.nih.gov/pubmed/19634184
Yoon Byung C, Jung H, Dwivedy A, O'Hare Catherine M, Zivraj Krishna H, Holt Christine E (2012) Local Translation of Extranuclear Lamin B Promotes Axon Maintenance. Cell 148(4):752-764. PMID: 22341447. Available at http://www.ncbi.nlm.nih.gov/pubmed/22341447
Yoshitake K, Aoyagi H, Fujiwara H (2010) Creation of a novel telomere-cutting endonuclease based on the EN domain of telomere-specific non-long terminal repeat retrotransposon, TRAS1. Mobile DNA 1(1):13. PMID: 20359340. Available at http://www.ncbi.nlm.nih.gov/pubmed/20359340
Young DW, Bender A, Hoyt J, McWhinnie E, Chirn GW, Tao CY, Tallarico JA, Labow M, Jenkins JL, Mitchison TJ, Feng Y (2008) Integrating high-content screening and ligand-target prediction to identify mechanism of action. Nature Chemical Biology 4(1):59-68. PMID: 18066055. Available at http://www.ncbi.nlm.nih.gov/pubmed/18066055
Yu W, Lee H, Hariharan S, Bu W, Ahmed S (2008) Level Set Segmentation of Cellular Images Based on Topological Dependence. Advances in Visual Computing:540-51. PMID: none. Available at http://dx.doi.org/10.1007/978-3-540-89639-5_52
Yu W, Lee HK, Hariharan S, Bu W, Ahmed S (2008) Quantitative neurite outgrowth measurement based on image segmentation with topological dependence. Cytometry Part A. PMID: 18951464. Available at http://www.ncbi.nlm.nih.gov/pubmed/18951464
Yu W, Lee HK, Hariharan S, Bu W, Ahmed S (2010) Evolving generalized Voronoi diagrams for accurate cellular image segmentation. Cytometry Part A 77(4):379-86. PMID: 20169588. Available at http://www.ncbi.nlm.nih.gov/pubmed/20169588
Yu Y, Wu J, Fan Y, Lv Z, Guo X, Zhao C, Zhou R, Zhang Z, Wang F, Xiao M, Chen L, Zhu H, Chen W, Lin M, Liu J, Zhou Z, Wang L, Huo R, Zhou Q, Sha J (2009) Evaluation of Blastomere Biopsy Using a Mouse Model Indicates the Potential High Risk of Neurodegenerative Disorders in the Offspring. Molecular Cell Proteomics 8(7):1490-500. PMID: 19279043. Available at http://www.ncbi.nlm.nih.gov/pubmed/19279043
Zanella F, Lorens JB, Link W (2010) High content screening: seeing is believing. Trends in Biotechnology 28(5):237-45. PMID: Available at http://www.ncbi.nlm.nih.gov/pubmed/20169588
Zhang B, Pham T (2011) Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble. BMC Bioinformatics 12(1):128. PMID: 21529372. Available at http://www.ncbi.nlm.nih.gov/pubmed/21529372
Zaritsky A, Natan S, Horev J, Hecht I, Wolf L, Ben-Jacob E, Tsarfaty I (2011) Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images. PLoS ONE 6(11):e27593. PMID: 22096600. Available at http://www.ncbi.nlm.nih.gov/pubmed/22096600
Zhang L, Yu C, Vasquez FE, Galeva N, Onyango I, Swerdlow RH, Dobrowsky RT (2009) Hyperglycemia Alters the Schwann Cell Mitochondrial Proteome and Decreases Coupled Respiration in the Absence of Superoxide Production. Journal of Proteome Research 9(1):458-71. PMID: 19905032. Available at http://www.ncbi.nlm.nih.gov/pubmed/19905032
Zhang L, Liu Y, Song F, Zheng H, Hu L, Lu H, Liu P, Hao X, Zhang W, Chen K (2011) Functional SNP in the microRNA-367 binding site in the 3’UTR of the calcium channel ryanodine receptor gene 3 (RYR3) affects breast cancer risk and calcification. PNAS 108(33):13653-8. PMID: 21810988. Available at http://www.ncbi.nlm.nih.gov/pubmed/21810988
Zhao J, Mo V, Nagasaki T (2009) Distribution of Label-retaining Cells in the Limbal Epithelium of a Mouse Eye. Journal of Histochemistry and Cytochemistry 57(2):177-85. PMID: 19001638. Available at http://www.ncbi.nlm.nih.gov/pubmed/19001638
Zhou X, Wong S (2008) Computational Systems Bioinformatics and Bioimaging for Pathway Analysis and Drug Screening. Proceedings of the IEEE 96(8):1310-31. PMID: 20011613. Available at http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790217/
Zueva E, Rubio LI, Ducongé F, Tavitian B (2011) Metastasis-focused cell-based SELEX generates aptamers inhibiting cell migration and invasion. International Journal of Cancer 128(4):797-804. PMID: 20473891. Available at http://www.ncbi.nlm.nih.gov/pubmed/20473891
Zunder ER, Knight ZA, Houseman BT, Apsel B, Shokat KM (2008) Discovery of Drug-Resistant and Drug-Sensitizing Mutations in the Oncogenic PI3K Isoform p110[alpha]. Cancer Cell 14(2):180-92. PMID: 18691552. Available at http://www.ncbi.nlm.nih.gov/pubmed/18691552
Zwang Y, Sas-Chen A, Drier Y, Shay T, Avraham R, Lauriola M, Shema E, Lidor-Nili E, Jacob-Hirsch J, Amariglio N, Lu Y, Mills GB, Rechavi G, Oren M, Domany E, Yarden Y (2011) Two Phases of Mitogenic Signaling Unveil Roles for p53 and EGR1 in Elimination of Inconsistent Growth Signals. Molecular Cell 42(4):524-35. PMID: 21596316. Available at http://www.ncbi.nlm.nih.gov/pubmed/21596316
